F15732

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Seed::light blue

Original: F15732

Determination of introduced cDNA(s)

RAFL09-10-M09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-10-M09 - Resource: pda17639

full reading [+] show sequence

CCGATATCTG TCTCTCCGTC GTCAGAGAGT TTCTTTCGCC GATTTCGCAA 
AAACCCTATG GAGCTCCTCC GATCCAACTT GTCTAGGGTT CAGATCCCTG 
AACCTACTCA TCGCATCTAC AAGCATGAGT GTTGCATCTC CTTCGATACT 
CCGAGATCCG AAGGAGGATT GTTCGTTGAT ATGAATAGTT TTCTTGCTTT 
CGGGAAGGAT TATGTTTCTT GGAACTATGA GAAGACTGGA AACCCTGTTT 
ATCTTCATAT TAAGCAGACT AGGAAGTCTA TTCCCGAGGA TCGGCCTCTC 
AAGAAACCGA CTCTGCTCGC TATAGGTGTT GATGGAGGCT TTGATAACAA 
TGAGCCAGAG TACGAGGAGT CTTATAGCAT AGTCATACTT CCGGATTTTG 
TTTCACTCCC GTTTCCTTCT GTTGAGCTAC CAGAGAAGGT GAGGATTGCT 
GTCGATACTG TAGTGAATGC CGTTGGTGCT GAGCGGAAAG AGCAAGTTGC 
AGCTTGGACA GCTGAGAAAA AGTTAATTAG TGAACATGCA TTGACACTGC 
AGCAAATCAA GAGTGGCATT GTCATTCCTC CCTCTGGTTG GAAATGTTCT 
AAGTGTGATA AGACGGAGAA TCTCTGGCTT AATCTTACCG ATGGAATGAT 
TCTCTGTGGA AGAAAAAACT GGGATGGAAC TGGTGGAAAC AACCATGCTG 
TTGAGCACTA CAAAGAGACA GCCTACCCTC TTGCTGTAAA GCTTGGAACT 
ATCACTGCTG ACTTAGAAGC AGCAGATGTT TATTCCTATC CGGAAGATGA 
CAGTGTTTTG GACCCGCTCC TGGCTGAGCA TCTGGCCCAT TTTGGAATTG 
ACTTCTCGTC GATGCAGAAG ACTGAAATGA CAACTGCTGA AAGAGAACTT 
GATCAAAATA CAAATTTTGA TTGGAACCGT ATACAAGAGA GTGGAAAAGA 
ATTGGTGCCA GTTTTTGGAC CTGGATATAC CGGACTTGTC AATCTTGGGA 
ACAGTTGCTA CTTGGCAGCT ACGATGCAGA TTGTTTTCTC TACCCATTCA 
TTTATTTCAA GATACTTTTC ACATCAGAGC TTAAAGATGG CTTTTGAGAT 
GGCTCCTGCT GATCCAACTT TGGACCTCAA TATGCAATTA ACAAAGCTTG 
GACACGGCTT ACTATCTGGG AAGTACTCAA TGCCTGCAAC TCAGAAGGAT 
GCTACAACTG GAGATCCTAG ACAAGAAGGA ATACCTCCTC GCATGTTCAA 
AAACGTAATT GCCGCGAGCC ACGCAGAATT CTCTTCTATG AGACAGCAGG 
ATGCTCTCGA CTTTTTCCTC CATCTGGTAG GCAAGGTTGA GCGTGCTAGC 
AACACGACAC CAGATTTAGA CCCCTCGAGG AGCTTCAAGT TTGGAATAGA 
AGAGAAGATC CTTTGTCCGT CTGGAAAGGT TGGATATAAT AAGAGGGAAG 
ACTGTATTCT TTCTTTGAAC ATTCCGCTAC ATGAGGCAAC TAATAAAGAT 
GAATTAGAAG CCTTTCACAA GCAAAAAGCA GGAAAAGGAT TGGAAGAGAA 
TGATATGAGG TCAAGTGATG AAATAGTACG CCCACGAGTT CCTTTAGAAG 
CCTGTCTAGC AAATTTTGCA TCATCAGAGC CGATTGAAGA CTACTATAGC 
TCTGCTTTGA AGGGAATGAC AACAGCTATC AAGACAACTG GTTTGACATC 
TTTCCCAGAT TATTTGGTCT TGCACATGCG GAAATTTGTT ATGGAGGAAG 
GCTGGGTGCC AAAGAAACTT GATGTATACA TTGATGTTCC GGATGTTATT 
GATATCAGCC ACATGCGTAG CAAAGGACTC CAACCTGGGG AAGAACTGTT 
GCCAGATGGC GTTCCAGAAG AAGTGATGGA ATCAGCGCAG CCCGTGGCAA 
ATGAGGAGAT AGTTGCACAG CTAGTCTCAA TGGGATTTAG CCAGCTTCAC 
TGCCAGAAAG CTGCCATAAA TACTTCCAAT GCTGGGGTTG AAGAGGCAAT 
GAACTGGTTA CTTTCTCACA TGGATGATCC AGACATCGAT GCACCAATCT 
CCCACCAGAC ATCTGACATT GATCAATCAA GCGTTGATAC CTTACTCTCC 
TTTGGTTTTG CTGAAGATGT TGCTCGGAAG GCACTAAAAG CCTCGGGAGG 
AGACATTGAG AAAGCAACAG ACTGGGTATT CAACAACCCT AATGCATCTG 
TTTCAGACAT GGATGTATCC TCTAGCAATT CAGCGCAGAC TCCGGCTCAA 
AGTGGATTAC CAGATGGAGG AGGGAAATAC AAGCTGTTTG GAATAGTAAG 
TCACATGGGA ACATCAGTGC ACTGTGGTCA TTACGTGGCT CACATATTGA 
AAGAAGGCCG CTGGGTAATT TTCAATGACG ACAAAGTTGG TATCTCGACT 
GATCCTCCTA AAGACATGGG TTATGTCTAC TTCTTTCAGC GGCTTGATTG 
ATTCGATGGA GCCAGTTACA GAGACAAAAA CTAATCCTTT TTTTTTTTAA 
ATAGAAACTT TTAAGGTCGA TAGGGTTTTT AACATTTGGA TTGAGGTGAC 
CCATGTGACT AGTTTCGGTT CCAAAATCTT ACATGTGGAT TAGTAAATTT 
GGTTCACTTG ATGATCTAAA AAAAAAA

Gene models with high sequence identity

AT3G20630.1 [+] show detail - ubiquitin-specific protease 14
E-value: 0; Score: 99.96

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Zinc finger, UBP-type	8.4e-24
HMMSmart	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	1.2e-07
HMMSmart	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	1.3e-09
PatternScan	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	0
PatternScan	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	0
HMMPIR	Ubiquitinyl hydrolase	0
ProfileScan	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	11.414
ProfileScan	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	14.234
ProfileScan	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	23.426
ProfileScan	Zinc finger, UBP-type	17.914
superfamily	Cysteine proteinases	6.7e-78
superfamily	UBA-like	1.9e-09
Gene3D	no description	2e-25
HMMPfam	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	1.1e-43
HMMPfam	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	6.1e-08
HMMPfam	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	4.3e-08
HMMPfam	Zinc finger, UBP-type	8e-17
HMMPanther	UBIQUITIN SPECIFIC PROTEASE 5/UBP14(YEAST)	4.9e-262
HMMPanther	UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT	4.9e-262

See the detailed result >

AT3G20630.1

Model type: Protein coding
Short Description: ubiquitin-specific protease 14
Curator Summary: Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Also involved in root responses to phosphate deficiency.
Computational Description: ubiquitin-specific protease 14 (UBP14); CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), UBA-like (InterPro:IPR009060), Ubiquitinyl hydrolase (InterPro:IPR016652); Has 2045 Blast hits to 1942 proteins in 227 species: Archae - 0; Bacteria - 2; Metazoa - 1042; Fungi - 463; Plants - 217; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
Link: InterPro Scan - TAIR