F15804

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15804

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15804

Determination of introduced cDNA(s)

  • RAFL05-07-N03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-N03 - Resource: pda01165

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-N03 - full reading 
    AACGATCCCA TTTTACTCCT TTTCACCACC TCTAGTAGCA GAGAGAGAGA 
    GAGAGTATGG CGATTACGGT GCCGAGACGG CAACTCTTCA TCGGCGGTCA 
    ATGGACTGAG CCCGTTCTCC GTAAAACTCT CCCTGTTGTC AATCCCGCCA 
    CCGAAGACAT CATCGGTTAT ATTCCAGCTG CAACTTCTGA AGATGTGGAG 
    CTTGCTGTGG AAGCTGCTAG GAAAGCATTT ACTAGGAACA ACGGAAAGGA 
    TTGGGCTAGA GCAACTGGTG CTGTTCGTGC CAAATACTTG CGCGCTATTG 
    CAGCTAAGGT AATAGAGAGG AAGTCTGAAC TAGCTAATCT TGAGGCTATT 
    GATTGCGGTA AACCTCTAGA TGAAGCAGCA TGGGACATGG ATGATGTTGC 
    TGGATGTTTT GAATATTATG CTGACCTAGC TGAAGGCTTG GATGCAAAGC 
    AGAAGACTCC TCTTTCTCTT CCGATGGATA CTTTTAAGGG TTATATTCTC 
    AAGGAACCCA TTGGCGTAGT TGGCATGATT ACTCCATGGA ACTATCCGTT 
    ATTGATGGCT GTCTGGAAAG TCGCTCCTTC ACTTGCTGCT GGGTGCACGG 
    CTATACTGAA ACCTTCAGAG TTGGCCTCCC TGACATGTTT GGAGCTCGCT 
    GATATTTGCC GCGAGGTGGG TCTACCACCT GGTGTTCTTA ATATTCTGAC 
    TGGTTTAGGA ACTGAAGCAG GTGCTCCACT GGCATCGCAT CCACATGTTG 
    ACAAGATTGT ATTCACTGGA AGCACAACAA CTGGAAGCAG CATTATGACT 
    TCCGCTGCCA AATTGGTGAA ACCAGTTTCC TTGGAGCTTG GGGGTAAAAG 
    CCCTATCATT GTCTTTGATG ATGTCGATAT TGATAAAGCT GTGGAATGGA 
    CTATGTTTGG TTGTTTCTGG ACGAATGGGC AGATTTGTAG TGCCACATCT 
    CGACTTCTTG TGCATGAAAG GATTGCTGAC GAGTTTTTGG ACAAGCTGGT 
    AAAGTGGACC AAGAACATTA AGATTTCAGA TCCTTTTGAA GAAGGCTGTA 
    GGCTTGGTCC TGTTGTCAGT AAAGGACAGT ACGAGAGAGT TCTAAAGTTT 
    GTCTCAAACG CTAGGAATGA AGGTGCAACT GTTCTTTGTG GAGGAGTTCG 
    TCCTGAGCAT TTAAAGAAGG GATACTTTGT TGAACCTGCG ATTGTTTCAA 
    ATGTGACTAC TTCAATGGAA ATCTGGAGAG AGGAAGTCTT TGGTCCTGCT 
    CTGTGTGTGA AAACATTCTC CACCGAGGAT GAGGCAATTC AGCTTGCAAA 
    TGACTCTCAA TATGGATTAG CAGGCGCAGT ATTATCAAAT GATCTGGAGC 
    GGTGTGATCG TGTTAGTAAG GCTTTCCAGG CGGGAATAGT GTGGGTCAAC 
    TGCTCTCAGC CATGCTTCTG CCAAGCTCCA TGGGGTGGAA CCAAACGCAG 
    TGGATTTGGC CGTGAATTGG GAGAATGGGG ACTTGAGAAC TACTTGAGTG 
    TGAAGCAGGT GACTCAGTAT ATCTCTGATG AACCATGGGG ATGGTACAAA 
    CCTCCTTCCA AGCTCTGAGA CAAACACTAG TTCCTGATAT TTCCTTAAAA 
    CATGTACTCA TGAGAATATA CCAATAAAGC AAGAGACCCT TCTGTAAGAG 
    AAATGGTATT GCTACTTTAA ATTCTTGAAA AAAATGAAAA ATAAGATGAG 
    ATGACAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT3G48170.1 [+] show detail - aldehyde dehydrogenase 10A9
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Aldehyde/histidinol dehydrogenase 8.5e-177
    HMMPanther BETAINE-ALDEHYDE DEHYDROGENASE 0
    HMMPanther Aldehyde dehydrogenase 0
    HMMPfam Aldehyde dehydrogenase 4.7e-178
    PatternScan Aldehyde dehydrogenase, conserved site 0
    PatternScan Aldehyde dehydrogenase, conserved site 0
    Gene3D Aldehyde dehydrogenase, N-terminal 4.7e-97

    See the detailed result >

    AT3G48170.1

    Model type
    Protein coding
    Short Description
    aldehyde dehydrogenase 10A9
    Curator Summary
    Arabidopsis thaliana putative betaine aldehyde dehydrogenase
    Computational Description
    aldehyde dehydrogenase 10A9 (ALDH10A9); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, oxidoreductase activity; INVOLVED IN: oxidation reduction, glycine betaine biosynthetic process from choline, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 10A8 (TAIR:AT1G74920.1); Has 62829 Blast hits to 62511 proteins in 3057 species: Archae - 483; Bacteria - 36293; Metazoa - 2617; Fungi - 2126; Plants - 2053; Viruses - 0; Other Eukaryotes - 19257 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR