F15815

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15815

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15815

Determination of introduced cDNA(s)

  • RAFL05-03-H07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-03-H07 - Resource: pda00772

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-03-H07 - full reading 
    GTTCCCTTTT TCATTGTATT CCTCAAATCT CTTTACTTGA TCGTTGGTTC 
    TCTCAAAAAT CAGATTTTTA TTTCTGGGTT TTGTTCGATT TTGTGATCAT 
    GGCGGTCATT GAGAGCGTCG GAGCTAATAC TACTGTGGAA GCTGGTGGTT 
    TGATCTCGCC GTCGCCGCCG TCTTCCGTCA CCAGTCAAGA ATCAGGAGCT 
    TCTTCTAACA ACGATCACGG TGGAAATGGA ATCCATGATG AGATCGGAGT 
    CCACGTGGCG AGATCCGACG GTGGTGAGAG TTTTAAGCGT GATATGAGAG 
    AGCTTCACGA GCTCTTGTCT AAGCTTAATC CTATGGCTAA AGAGTTTATT 
    CCTCCTTCAC TTACTAAGCC AGTTGTTAAT GGTTTTAACG GCGGTTTCTT 
    CGCCGTTAAT AATGGCTTTG TTGCTGCCGG AAATTTCCCC GTCAACGAAG 
    ACGGTAGCTT TCGTCGGAAG AAGTCGTTCG GACAACAAGG GAAACGGAGA 
    ATGAATCCTA GGACAAGTTT GGCTCAGCGT GAAGAGATCA TAAGAAGAAC 
    TGTCTATGTG TCTGATATTG ACCAACAGGT CACTGAGGAG CAGCTTGCTG 
    GTTTGTTTAT CGGCTTTGGA CAGGTTGTTG ACTGTCGTAT ATGTGGTGAT 
    CCCAACTCAG TACTTAGGTT TGCTTTCATC GAGTTCACTG ATGAAGTGGG 
    TGCAAGGACT GCTCTGAATT TGTCTGGGAC GATGCTTGGA TTCTATCCTG 
    TGAAGGTTAT GCCGTCTAAG ACAGCTATTG CACCGGTTAA CCCAACCTTC 
    TTGCCAAGGA CTGAAGATGA GCGTGAGATG TGTGCAAGAA CTATCTACTG 
    CACTAACATT GACAAGAAGC TCACTCAAAC CGACATTAAA CTCTTCTTTG 
    AGTCTGTGTG TGGCGAGGTG TACCGTCTGA GGCTACTGGG CGATTATCAT 
    CATCCAACTC GCATCGGCTT CGTGGAGTTT GTCATGGCTG AAAGCGCGAT 
    AGCGGCTCTC AACTGCAGTG GTGTCCTTCT TGGTTCTTTA CCGATAAGGG 
    TGAGTCCATC AAAGACACCG GTTCGTTCCC GTGCTATCCC GCGACATCAA 
    ATGCATTAAC CGTAGCTACA AGTTTTATAT ATATTTCTGC TCCTCACAGA 
    CATGTAAAGA ATGTTTGTCT GAAACTTCTG GTTCTTCTGT TTTCCCGTAT 
    GTAATGCTAG AAGCTTGATG ATGCTTCTGT TGCCTTTTGC TTTTGGGTAA 
    ATCTCTTAGG GAGAGTTTTT TCGATTTGGG TTCCTACGTT TAGTAGTTTA 
    CACAGAGCAG AAGAGTAAAA CACTGAGAGA GGCTTTTGAA GATTGTCTCT 
    GTTTTTTAGT TATTTATACT CTTACCCCTG AAGTTATTAG AAACTTGCTT 
    TGGTGCCT

    Gene models with high sequence identity

    1. AT4G10610.1 [+] show detail - CTC-interacting domain 12
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 2.8e-14
    HMMSmart RNA recognition motif, RNP-1 3.6e-10
    HMMPfam RNA recognition motif, RNP-1 1.2e-11
    HMMPfam RNA recognition motif, RNP-1 3.4e-07
    HMMPfam Ataxin-2, C-terminal 1.2e-05
    superfamily RNA-binding domain, RBD 1.2e-17
    superfamily RNA-binding domain, RBD 6.6e-14
    Gene3D Nucleotide-binding, alpha-beta plait 1.8e-12
    Gene3D Nucleotide-binding, alpha-beta plait 7.3e-10
    HMMPanther RNA-BINDING PROTEIN 2.8e-16
    ProfileScan RNA recognition motif, RNP-1 13.72
    ProfileScan RNA recognition motif, RNP-1 11.332

    See the detailed result >

    AT4G10610.1

    Model type
    Protein coding
    Short Description
    CTC-interacting domain 12
    Curator Summary
    RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif).
    Computational Description
    CTC-interacting domain 12 (CID12); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 11 (TAIR:AT1G32790.1); Has 2841 Blast hits to 2335 proteins in 253 species: Archae - 0; Bacteria - 4; Metazoa - 1803; Fungi - 259; Plants - 569; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR