F15816

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15816

Determination of introduced cDNA(s)

RAFL09-11-N08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-11-N08 - Resource: pda05411

full reading [+] show sequence

ACTCCAAATT TTGTCTGCTC ACCATTTTTC CACAAAGCCA ATTCTCTTGT 
ATCCAATGCC TATGTTCTAC TCCTCTCGTT TTCTCTTCTT CTTCACCATC 
GTCCCCTTAC TCGTCTCTAT CGCTCTCTAC CAACTCGACA CATTTGACCC 
AGCTCCGGTT CCTTCCGAGG CATACGCCTC CTCTACTACT TCAATCCCGC 
CGCTTATCAG CGACAAATAT CTCACCGGAG CTGAGTTTAT TGGCGTCGGT 
CTTCTCGATA AACCCGAAGA TATCGCCTAT CATCAAGACT CTAATCTCAT 
ATATACTGGC TGCATAGATG GATGGGTGAA ACGAGTCAGT GTCCACGACT 
CAGCTAATGA CTCAGTCGTT GAGGATTGGG TCAATACCGG TGGTAGACCG 
CTCGGAATCG CTTTCGGAGT CCACGGCGAA GTCATTGTGG CAGACGCATA 
CAAGGGACTG TTGAACATAA GTGGTGACGG GAAGAAGACG GAATTATTGA 
CGGATCAAGC GGAAGGCGTT AAATTTAAGC TGACTGATGT AGTCGCCGTT 
GCAGATAACG GCGTTTTGTA TTTCACTGAT GCTTCTTACA AGTACACTCT 
GCATCAAGTC AAGTTTGACA TTTTGGAAGG TAAACCACAT GGCCGTCTCA 
TGAGCTTTGA TCCCACCACA CGTGTTACAC GTGTACTTCT CAAAGACCTT 
TACTTCGCTA ATGGCGTCTC CATGTCTCCT GATCAAACGC ATCTCATCTT 
CTGTGAAACT CCCATGAGAC GATGCAGCAA GTATTACATT AATGAAGAGC 
GTGTAGAGGT GTTTATTCAA GGCTTACCAG GTTATCCAGA TAACATTCGG 
TACGACGGAG ATGGCCATTA CTGGATTGCT ATGGTTTCGG GAGCATCAAC 
GTTGTGGAGG CTCTCGATGA AATACCCTTT CTTGAGGAAA ATCACAGCCA 
TAGCGGCTAA GTATGGCGTG GAACTTATGT TCATGAAGAA TGCAGGTGTT 
CTGCAGGTGG ATTTGGATGG GAATCCCATC GCTTACTACC ATGATCAGAG 
ACTCTCTCAC ATTACCACCG GTATCAAGAT TGGGAACTAT CTCTATTGTG 
GAAATATCTT GCATTCGTAC ATTATCCGAC TCGATCTCCT GAAGTATCCT 
GCACAGAAGA AGAAGCTTTG AAACATCAAA GTTTATACAA GCACTAAAAA 
TTTCCACTTT AGGAGTATGC ACTTTCACAA AAATGTAAAC GTATCGTCCC 
TTAGAATAAA TGTATGATAA TGTCTCTTAA GGAGTACATA GTAGCCTGAA 
ACAATGAATA CAAAACCAAT CAACCATACA AGCCATTCCA ATGTGTCAAG

Gene models with high sequence identity

AT3G51430.1 [+] show detail - Calcium-dependent phosphotriesterase superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Strictosidine synthase, conserved region	1.5e-39
Gene3D	Six-bladed beta-propeller, TolB-like	5.8e-34
HMMPanther	MUCIN-RELATED	7e-201
HMMPanther	Strictosidine synthase	7e-201
superfamily	Calcium-dependent phosphotriesterase	1.8e-46

See the detailed result >

AT3G51430.1

Model type: Protein coding
Short Description: Calcium-dependent phosphotriesterase superfamily protein
Curator Summary: Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
Computational Description: YELLOW-LEAF-SPECIFIC GENE 2 (YLS2); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: response to ethylene stimulus, leaf senescence, alkaloid biosynthetic process, response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G51440.1); Has 1475 Blast hits to 1462 proteins in 362 species: Archae - 36; Bacteria - 561; Metazoa - 225; Fungi - 12; Plants - 456; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Link: InterPro Scan - TAIR