F15841

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15841

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15841

Determination of introduced cDNA(s)

  • RAFL07-11-O11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-11-O11 - Resource: pda04158

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-11-O11 - full reading 
    ATCACGAGAA CCACACAAAT ACGCGGCAAA GAGAGAGAAA GATAGAGAGA 
    GAGAGAGAGA GAGAGAGAGA AAGCGGTGGA GTCGTGATAA GGGAGAAGCT 
    CTGGATACAG TCTCTTCCCG TCGTCGGAGA CGGAGTTTAT GCCTATTGGC 
    TCCTGAGGTT AGATTAAGCT TCGTATTTAG TGGATTTTCT TCTTTTGAGA 
    TATGGAACAA GATTACATCT GCTCAGGGTG CTACCAGTAT CGAGTTTTTT 
    CATTGCAAGA AGCACTCGAT TGGCGGTTTC TTGTGCACTC AGATTTCCTT 
    ATCGGCTCTT TCGTGAACTG CACCTAGTGG TCAGACCTTC TGCGATCTTT 
    ACGGAAGGTG TGATGCAAAT TTCTGATTCA GGGCTGATGT TTGCAAGTTA 
    TCCTACCTTC ACACAGTCCT AGAGTGTCAT CTAAATCTGT TCCCTGCACT 
    CAAAAACTAG TTGGTCCTTC TTCCATATCC TGTTCTTATG AGAGCTTGTT 
    GAAGAAGGAT GAATCAGTTT TTTTTCAAGT TATGACTTTT CTTAGCTGTG 
    TCTTTTCCTC GAGTCTCTGA ACCCCTTGAG TGAAATGTTG TGAGCATAAG 
    TTTCGTCCAG CTACCCAGAA CATTACTTTT TGTTAGTGCG TCTTCCAATT 
    CTCAGTATGT TTTGTCTTTT TCTCTTAGCG TCTTTCTTTT GCCTTGTTGG 
    TCAACCCATT GATGTTCAAA CTTCAAAGTA AATAAGGGTC AGTCTACCCA 
    GCGGGAGAAT CATTGATCTT GCTGCCATAC GAACAACTGG AAGATTAAAG 
    TGATAGACAT ATTTCAGAAG TTCTTTACAG AGAAATACTT AAGGGGATAC 
    TTTGCTTCAC CTAGAGGCGA TGGAGAGGTA TACATTACTC AAAGAAGTTG 
    GTGACGGAAC ATTTGGGAAT GTTTGGCGAG CTGTCAATAA ACAGACGAAT 
    GAAGTTGTGG CAATTAAAAG AATGAAGAAG AAGTATTTCT CTTGGGAAGA 
    GTGTGTGAAT CTAAGAGAAG TGAAGTCACT TAGCAGAATG AATCATCCAA 
    ACATTGTGAA GCTGAAGGAA GTCATCCGGG AAAATGATAT CCTATACTTT 
    GTGTTTGAGT ACATGGAGTG CAATCTTTAC CAGCTTATGA AGGATCGCCC 
    TAAGCATTTT GCAGAATCTG ATATCCGAAA TTGGTGCTTC CAGGTCTTCC 
    AAGGCCTTTC TTATATGCAT CAGCGTGGAT ACTTCCACCG TGATCTTAAG 
    CCAGAAAATC TATTGGTCTC GAAAGATGTC ATTAAGATTG CTGATCTTGG 
    CCTGGCCCGG GAGATCGACT CGAGTCCACC TTATACAGAA TATGTCTCTA 
    CACGCTGGTA TAGGGCACCT GAAGTACTGC TACAATCATA TGTATACACG 
    TCAAAAGTTG ATATGTGGGC GATGGGTGCT ATTATGGCGG AGCTGTTGTC 
    TCTTCGCCCT CTCTTTCCTG GAGCTAGTGA AGCGGATGAG ATATACAAAA 
    TCTGCAGTGT CATAGGCAGC CCAACCGAAG AGACCTGGTT GGAGGGGCTG 
    AACCTTGCCA GCGTTATCAA TTACCAATTC CCTCAGTTTC CCGGTGTACA 
    TTTATCAAGT GTGATGCCAT ATGCTAGTGC GGATGCGGTT AACCTTATTG 
    AGCGCCTTTG CTCGTGGGAT CCCTGCAATA GACCGACTAC TGCAGAGGCT 
    CTACAGCATC CGTTCTTCCA AAGTTGCTAC TATATTCCCC CATCTCTCCG 
    TCCCAAGCTG TCTGAACCAA GAGGGTCTCT CGAGCAGCAG CAATCCGTGA 
    AGCGTTTACC AGCGGCTCCG ACTTATAATG CTAATAAGCC GTTGAACACC 
    TACGTTACTC CAAAGACGAA TGCTCCTTTT AGCAATGGTG TCAACAGTTA 
    TGTTACTCCA AAGACAAATG CTCCATTTAG CAATGGTGTC AACAGTTATG 
    TTACTGCAAA GACGAATGCT CCTTTTAGCA ATGGTGTCAA CAATTATGTT 
    GCTCCAAAGA TGAATGCTCC TTTTGACAAT GGTGCGACCC AGCAGAAGGT 
    GGATACGACT AATAATAATA ACCAGAACAC GGCGTGGAAC AACAAACCTG 
    TGAGAAGTTA TAACGTTAAA GATTCAAAGT ATAGACCACC GGGAAGGAAG 
    AGTCCACTTG CAGCATCTAT GGAAAAGAAC TGGGTCTTTT CCCGTGGAGC 
    ATCAGAGACT GCAAATAAAC TGGCAAATGA AACAATTGGA GGAAGATGGA 
    CTCAAAGTCA AAGGCAACAA CAACCGGCGA TGAAGGCAGG GTGGGTGGGA 
    GAAAGTGGTG ACATGTTCCT CAGACCTACA CAGCCTTCCA ATCCCTACTC 
    TAGGAAAATC GCCGGTTAAG CTGAAAGATT CTGTTATGGC GCATCTAAGT 
    TACGAGCCCT CATCAACACC TTCACCCGTC GTTGTGCTTT TGATTATCAT 
    CATCACCTAT CTGAGAGTCC AAGTTATTTG AAGACAACTT ATGTTGATTT 
    TTTCTCTTTT GTGTTTCGTT CTTTTAAACC TCTCTTGTTT GTTCGGTAGT 
    ACTTCCCGTC TTCATGACGA TTATGTATGG AGTGTTTCTT TTTACAGTTC 
    GCAATAAAAG CTCTCGACAT TGCAC

    Gene models with high sequence identity

    1. AT5G45428.1 [+] show detail - conserved peptide upstream open reading frame 24
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 2.6e-89
    HMMSmart Serine/threonine-protein kinase domain 3.6e-100
    HMMSmart Tyrosine-protein kinase, catalytic domain 1e-14
    Gene3D no description 4e-65
    ProfileScan Protein kinase, catalytic domain 47.863
    HMMPanther MAK/IME2(YEAST)-RELATED 8.7e-153
    HMMPanther CDC2, MAP KINASE-RELATED 8.7e-153
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 1e-71

    See the detailed result >

    AT5G45428.1

    Model type
    Protein coding
    Short Description
    conserved peptide upstream open reading frame 24
    Curator Summary
    Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF24 represents a conserved upstream opening reading frame relative to major ORF AT5G45430.1
    Computational Description
    conserved peptide upstream open reading frame 24 (CPuORF24); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 25 (TAIR:AT4G19112.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR