F15930

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15930

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15930

Determination of introduced cDNA(s)

  • RAFL04-10-G08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-10-G08 - Resource: pda00308

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-10-G08 - full reading 
    AAAGTAGTAC TTTTATTGGC GATCCTCATC CATTTCCTCT CTCGTCGTTG 
    TCTGGGAATC GGTGACTTTT GAATCTTTGC GACTCTCTTG TAGTGATAAA 
    TTGATCGTTA TCTACTTTGA TACTCTCCGG TCGTTTTTCT CCGGTGCTGG 
    AGATCCGATT CCTTATCTTT TCTGTCTTGG CTCGAGATCC GAGCCAAGCA 
    GTAAAGAAGA CGACTTTGTT TCACGATTTG GAATTTGATT CCTGCGATCA 
    CAGATGGCAT CGGGTGAGGG AATTTTGACG GATGGACAGT GGAAAAAGCT 
    TGAAATAGCA ACTCATAATT CTGGAAGTTT GTCATCATCG CCTAAATCTC 
    ATACTCTCTT TGCTGATCTG AACATTAAGT CTCCCACTGG TGGCAAAGGA 
    CCAGTTGCTG GGATTCCTAA TAGGCATGTG CGACGTACTC ACTCAGGGAA 
    GCATATTCGT GTTAAGAAGG AGGGTGCTGG TGGCAAAGGA ACTTGGGGAA 
    AGCTTCTTGA CACTGATGAT GGTGACTCCT GTATTGATAA GAATGATCCC 
    AATTACGATA GTGGAGAGGA CGCATATGAT GGACTTGTTG ATTCACCGGT 
    ATCAGACCCG TTGAATGATT ACAAAAAGTC AGTAGTTTCC ATCATTGACG 
    AATACTTTAG CACCGGGGAT GTGAAAGTGG CGGCATCTGA CCTCAGGGAA 
    CTTGGTTCAA GCGAATATCA TCCTTACTTC ACCAAGCGAC TTGTTTCTAT 
    GGCCATGGAC AGACACGATA AGGAGAAGGA AATGGCTTCA GTGCTACTCT 
    CTGCATTGTA TGCTGATGTT ATTTTACCTG ATCAAATTAG GGATGGATTT 
    ATAAGACTTC TCAGATCTGT TGATGACCTT GCGGTGGACA TCCTTGATGC 
    TGTTAATGTC CTTGCATTGT TTATTGCACG GGCCATCGTT GACGAAATTC 
    TCCCTCCGGT TTTTCTGGTT AGATCTAAGA AGATTCTTCC AGAATCTTGC 
    AAAGGGTTTC AGGTTATTGT AACTGCAGAA AAGAGCTATC TCTCAGCTCC 
    TCACCATGCA GAACTAGTGG AGAAGAAATG GGGAGGTAGT ACTCACACTA 
    CAGTAGAAGA AACGAAGAAA AAGATATCTG AAATCTTGAA GGAATACGTG 
    GAAAACGGAG ACACTTACGA AGCTTGTAGA TGCATCAGGG AATTAGGTGT 
    CTCGTTTTTC CATCATGAGG TTGTGAAGAG GGCTTTGGTT CTGGCGATGG 
    ATTCTCCAAC CGCTGAGTCA CTTGTACTAA AGCTGTTGAA GGAAACTGCT 
    GAAGAAGGAC TGATCAGTTC GAGTCAAATG GTGAAGGGAT TCTTCCGAGT 
    AGCAGAGAGT CTCGATGACC TTGCTCTAGA TATCCCATCT GCCAAAAAGC 
    TGTTTGATTC GATAGTTCCA AAGGCTATTT CTGGAGGCTG GCTCGATGAT 
    TCATTTAAGA TAACCTCTGA TCAAGATGGA GAAAAATCGA GTCAAGACGG 
    AAAGCTAAGA CAGTACAAGA AGGATACAGT GAACATAATT CAGGAATATT 
    TCTTATCAGA TGACATTCCT GAGCTAATCC GCAGTCTTCA AGATTTAGGG 
    GCACCTGAAT ATAACCCGGT GTTTCTGAAG AGGCTCATAA CTCTTGCTCT 
    AGACAGGAAA AACAGAGAAA AGGAAATGGC TTCGGTTCTT CTTTCTGCTC 
    TTCACATGGA GCTATTCTCA ACTGAAGATT TCATAAACGG TTTCATTATG 
    CTCCTGGAAT CGGCAGAAGA CACAGCTTTA GATATCATGG ACGCATCAAA 
    CGAACTTGCT CTGTTTTTAG CTAGAGCTGT GATTGACGAC GTCTTAGCTC 
    CACTTAACCT TGAAGATATC TCAACCAAGC TGCCTCCAAA ATCAACCGGA 
    ACCGAAACAG TCCGCTCAGC CAGGTCTCTT ATCTCCGCCA GACACGCAGG 
    AGAGAGACTC CTAAGAAGCT GGGGAGGTGG AACCGGCTGG ATAGTGGAAG 
    ATGCAAAGGA CAAAATCTCG AAACTCCTAG AAGAATACGA AACAGGAGGA 
    GTAACATCAG AAGCTTGTCA ATGTATCCGC GATCTAGGGA TGCCTTTTTT 
    CAACCACGAA GTAGTGAAGA AAGCTTTGGT GATGGCAATG GAGAAGCAGA 
    ATGATCGGTT ACTGAATCTG CTTGAGGAGT GTTTTGGTGA AGGATTGATT 
    ACAACTAACC AAATGACGAA AGGGTTTGGT CGTGTTAACG ACAGCCTCGA 
    TGACTTGTCG CTTGATATAC CGAACGCGAA AGAGAAGTTT GAGCTGTATG 
    CTAGTCATGC CATGGACAAT GGTTGGATCC TTCCCGAGTT TGGGATTTCT 
    GCAACTCAGT GATTAGTGGT TCTCTTATCA GTTTCTTGTG TTTGTGCTTA 
    CGATACTTTC CTCACTATCT ACATATATGT ATGGATTCAG TTAGTAGATA 
    AACATGAGAT GTTTATATGT TAAAAAGAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT5G63190.1 [+] show detail - MA3 domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Initiation factor eIF-4 gamma, MA3 3.1e-42
    HMMSmart Initiation factor eIF-4 gamma, MA3 2.9e-36
    HMMSmart Initiation factor eIF-4 gamma, MA3 6.7e-36
    HMMSmart Initiation factor eIF-4 gamma, MA3 1.6e-32
    ProfileScan Initiation factor eIF-4 gamma, MA3 25.06
    ProfileScan Initiation factor eIF-4 gamma, MA3 24.305
    ProfileScan Initiation factor eIF-4 gamma, MA3 22.231
    ProfileScan Initiation factor eIF-4 gamma, MA3 22.662
    HMMPfam Initiation factor eIF-4 gamma, MA3 9.5e-33
    HMMPfam Initiation factor eIF-4 gamma, MA3 3.6e-32
    HMMPfam Initiation factor eIF-4 gamma, MA3 5.2e-29
    HMMPfam Initiation factor eIF-4 gamma, MA3 2.1e-31
    HMMPanther PROGRAMMED CELL DEATH 4 4.5e-271

    See the detailed result >

    AT5G63190.1

    Model type
    Protein coding
    Short Description
    MA3 domain-containing protein
    Computational Description
    MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT3G48390.1); Has 1948 Blast hits to 791 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1230; Fungi - 12; Plants - 571; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR