F16015

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16015

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16015

Determination of introduced cDNA(s)

RAFL09-79-F05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-79-F05 - Resource: pda08815

full reading [+] show sequence

TCGCTGCTTT TACTACAAGA GGAAACAGAG ATGAGCAGAG ACGGCGGAGA 
TGTAATTGAG ACGGCGGTTA AGAGTCTTGG CAAAGGTTTC GATTTGACGG 
CGGATTTCCG GTTGAAATAC TGTAAAGACG GCGACGGCTC CGCCGGAGAT 
GACAGATTGG TTGTGCTTGA CCAAACTCAA AACAGAGAAT TGCATATTCC 
TGGTTTCGGT GTTTTTCAAA ATGTCTCCGC CGATATAAAC TGCGACAAAG 
GAGAACGAAC TCGATTCCGT TCCGACATTC TTGACTTCAA CAAGATGTCG 
GAGTATTTTA ACCAGAGGTC GTCGGTGACC GGAAAAATAC CGTCGGGAAA 
TTTCAACGCG ACGTTCGGGT TTCAAAGCGG GTCATGGGCG ACAGACGCCG 
CAAACGTTAA ATCTTTAGGT CTTGACGCTT CTGTTGTAAC GCTATTTAAT 
CTCCACATAC ACAATCCTAA TCGTTTGCGG CTCACTGACC GCGTCCGAAA 
CGCAGTTCCT TCATCTTGGG ACCCACAATT ATTGGCTAGG TTTATAGAGA 
GGTATGGAAC ACACGTAATA ACAGGAGTGA GCGTAGGAGG ACAAGACGTG 
GTAGTTGTGA GGCAAGACAA GTCATCTGAT CTCGACAACG ACCTCCTCCG 
TCACCATCTC TATGATCTTG GCGACCAATT GTTTACCGGC TCTTGCCTTC 
TCTCTACACG CCGGCTCAAT AAGGCCTATC ACCACTCACA CTCTCAACCC 
AAGTTTCCGG AGGCTTTCAA CGTCTTTGAT GACAAACAAA CGGTTGCTTT 
CAACAATTTT TCGATAAATT CTCAAAATGG AATAACGGTT ATATGCGCCA 
AAAGAGGAGG CGACGGAAGA GCAAAGAGCC ATAGCGAATG GCTAATAACA 
GTCCCGGACA AGCCTGACGC GATCAATTTC AACTTTATTC CGATCACATC 
ACTCCTTAAA GACGTCCCTG GCTCTGGTCT TCTCTCTCAC GCCATGTCTC 
TCTACCTAAG ATACAAGCCG CCGTTAATGG ACCTACAATA CTTCTTGGAC 
TTCTCTGGGC CAAGAGCATG GGCTCCGGTC CATAACGACC TTCCATTTGG 
CGCGGCACCA AATATGGCTT CGGCCTATCC AGCTCTTCAC ATCAACTTCA 
TGGGTCCCAA ACTATACGTT AATACCACTC CCGTGACTAG CGAGAAGAAT 
CCAGTAACCG GAATGCGATT TTTCCTTGAA GGCAAGAAAT GCAATAGGCT 
GGCTATACAC CTACAACACC TAGACAACAC AAGAACTACG GTTGGGGAAA 
AGATCACTGA CGAACATATA TGGAGAGGCT CCGATCAAAT CACCGACAAT 
GATCGCTACT TCGAACCTTT AAACGGTAAG AAATTCTCAC ACGTGTGTAC 
GGTTCCAGTG AAGTACGACC CAAACTGGAT CAAAACAACA AGCAATCACA 
AGTCCCAAAA CGACGTAGCT TTCATCGTCA CCGGAGCACA ACTCGAAGTG 
AAAAAACACG GCTCAAAATC CGTTCTCCAT CTCCGACTCC GTTACACTAA 
AGTCTCTGAT CATTACGTCG TTCAGAATAG TTGGGTTCAT GGACCAATTG 
GGACTTCTCA GAAATCGGGA ATCTTCTCTT CCATGAGCAT GCCGTTGACT 
AGTGGGAGTG TTCATCATAA TATGATCCAA AAAGACAAAA ACGAGGTCGT 
TTTGGATTCA GGTGTCTTCC CTGGTGGACC TCCTGTGCCG GCGAATAACA 
AGATAGTGAA ATTCGTCGAT CTTTCGCAGT TATGTCGAGG ACCTCAACAT 
AGTCCTGGTC ATTGGTTAGT CACTGGAGTG AGGCTTTACT TGGACAAGGG 
CAAACTTTGC TTACACGTCA AGTTTGCTCT GCTACATCGC CAACGTCTTC 
TTGTCTCTTC TTGAAGAAAA TATAACATTA TTTTTTTATA TACAAGTACG 
TTTCTTTTTT TGTTTTCCTC CAAAATTGCG ACATACAAAG GATGATTTCT 
TGATTTTGGA GTGTGTGAAT ATATAGAGCT GTGTATGTGC TTTAATGGGA 
TTGGCCCATT CAGAGAAATT GTTTATGTAC ATACATATGT TGAGAGGTCG 
AACATAGAAC TCTTAGTGGT AGCT

Gene models with high sequence identity

AT1G14780.1 [+] show detail - MAC/Perforin domain-containing protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Membrane attack complex component/perforin (MACPF) domain, metazoa	8.4e-09
HMMPfam	Membrane attack complex component/perforin (MACPF) domain	4.2e-28
ProfileScan	Membrane attack complex component/perforin (MACPF) domain	22.972

See the detailed result >

AT1G14780.1

Model type: Protein coding
Short Description: MAC/Perforin domain-containing protein
Computational Description: MAC/Perforin domain-containing protein; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2); Has 221 Blast hits to 220 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR