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F16202_77

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16202_77

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16202_77

Determination of introduced cDNA(s)

  • RAFL09-83-O09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-83-O09 - Resource: pda08907

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-83-O09 - full reading 
    ACCACTTTAC CACTTATCAA AGCTTCTTCA AAGCTTGCAA AAAATTCTCC 
    ACAGTCTCGA AGAAGTAGAA GAAGATGGGT AAGGAAGATG ACCGAGGAGA 
    AGAGTACCTG TTCAAGATTG TCCTAATCGG CGATTCCGCT GTCGGAAAAT 
    CGAACTTGCT GTCTCGATTT TCGCGGGATG AGTTCGACAC GAACTCAAAA 
    GCGACAATCG GAGTGGAATT TCAGACGCAG CTGGTTGAAA TCGAAGGGAA 
    AGAAGTGAAA GCTCAGATCT GGGACACTGC TGGTCAAGAG AGGTTTAGAG 
    CTGTCACTTC TGCTTATTAC AGAGGTGCTT TTGGTGCTCT CATCGTTTAT 
    GACATCACTC GAGGTGACAC TTTCGAAAGC GTTAAACGTT GGCTCCAGGA 
    ACTCAACACT CATTGTGACA CGGCAGTGGC ACAAATGCTA GTTGGGAATA 
    AATGCGATTT GGAGGATATA AGAGCGGTGA GTGTGGAGGA AGGGAAAGCT 
    CTTGCGGAGG AAGAAGGATT GTTCTTTATG GAAACATCGG CTCTGGACGC 
    CACAAATGTA GACAAAGCCT TTGAGATCGT TATCAGAGAG ATCTTCAACA 
    ATGTCAGCCG CAAACTTCTC AACTCTGATG CTTACAAAGC AGAGCTTTCC 
    GTTAACCGGG TCAGCCTTGT CAACAACCAA GATGGCTCCG AGAGCTCTTG 
    GCGGAATCCG TCTTGTTGCT CCCGATGATT TCAATCAATC TTGTTTTTAC 
    CAGAGAAAGC TTTATAAGGT TATAATTATC ATTTATGAAG TCAGACTTAT 
    AATAAGATAC TTGCAATCTG TTTTGTCTTG ATACTACACA TTGGTTCTGG 
    CCGAGGGATT AAACAAAAAT GACCTGACCG AATAGAGAAA ATGGC

    Gene models with high sequence identity

    1. AT3G07410.1 [+] show detail - RAB GTPase homolog A5B
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Rab11-related 4.5e-80
    HMMPanther RAS-RELATED GTPASE 4.5e-80
    HMMSmart Ras small GTPase, Ras type 7.1e-28
    HMMSmart Ras small GTPase, Rab type 9.4e-103
    HMMSmart Small GTPase, Rho type 2.3e-12
    HMMSmart Ran GTPase 2.1e-05
    HMMPfam Ras 4.1e-62
    FPrintScan Ras GTPase 1.1e-40
    FPrintScan Ras GTPase 1.1e-40
    FPrintScan Ras GTPase 1.1e-40
    FPrintScan Ras GTPase 1.1e-40
    FPrintScan Ras GTPase 1.1e-40
    HMMTigr Small GTP-binding protein 4.4e-36
    Gene3D no description 1.9e-63
    ProfileScan Small GTPase 34.201
    superfamily P-loop containing nucleoside triphosphate hyd 8.5e-62

    See the detailed result >

    AT3G07410.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog A5B
    Computational Description
    RAB GTPase homolog A5B (RABA5b); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G43130.1); Has 27936 Blast hits to 27886 proteins in 749 species: Archae - 21; Bacteria - 143; Metazoa - 14734; Fungi - 3835; Plants - 3288; Viruses - 20; Other Eukaryotes - 5895 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR