F16312

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16312

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16312

Determination of introduced cDNA(s)

  • RAFL09-12-B08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-12-B08 - Resource: pda01653

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-12-B08 - full reading 
    ATGATCTTCA AGAAGAAAGA TAAACGACTC CGAAGAAAGA TTTAAGTTAT 
    TGTTGTTCAT ACAAAAAGAA GGGTTTGCTT TCAGTTTCCG GAGTATAAGA 
    AAAGATGTTC GAGCCAAATA TGCTGCTTGC GGCTATGAAC AACGCAGACA 
    GCAATAACCA CAACTACAAC CATGAAGACA ACAATAATGA AGGATTTCTT 
    CGGGACGATG AATTCGACAG TCCGAATACT AAATCGGGAA GTGAGAATCA 
    AGAAGGAGGA TCAGGAAACG ACCAAGATCC TCTTCATCCT AACAAGAAGA 
    AACGATATCA TCGACACACC CAACTTCAGA TCCAGGAGAT GGAAGCGTTC 
    TTCAAAGAGT GTCCTCACCC AGATGACAAG CAAAGGAAAC AGCTAAGCCG 
    TGAATTGAAT TTGGAACCTC TTCAGGTCAA ATTCTGGTTC CAAAACAAAC 
    GTACCCAAAT GAAGAATCAT CACGAGCGGC ATGAGAACTC ACATCTTCGG 
    GCGGAGAACG AAAAGCTTCG AAACGACAAC CTAAGATATC GAGAGGCTCT 
    TGCAAATGCT TCGTGTCCTA ATTGTGGTGG TCCAACAGCT ATCGGAGAAA 
    TGTCATTCGA CGAACACCAA CTCCGTCTCG AAAATGCTCG ATTAAGGGAA 
    GAGATAGACC GTATATCCGC AATCGCAGCT AAATACGTAG GCAAGCCAGT 
    CTCAAACTAT CCACTTATGT CTCCTCCTCC TCTTCCTCCA CGTCCACTAG 
    AACTCGCCAT GGGAAATATT GGAGGAGAAG CTTATGGAAA CAATCCAAAC 
    GATCTCCTTA AGTCCATCAC TGCACCAACA GAATCTGACA AACCTGTCAT 
    CATCGACTTA TCCGTGGCTG CAATGGAAGA GCTCATGAGG ATGGTTCAAG 
    TAGACGAGCC TCTGTGGAAG AGTTTGGTTT TAGACGAAGA AGAATATGCA 
    AGGACCTTTC CTAGAGGGAT CGGACCTAGA CCGGCTGGAT ATAGATCAGA 
    AGCTTCGCGA GAAAGCGCGG TTGTGATCAT GAATCATGTT AACATCGTTG 
    AGATTCTCAT GGATGTGAAT CAATGGTCGA CGATTTTCGC GGGGATGGTT 
    TCTAGAGCAA TGACATTAGC GGTTTTATCG ACAGGAGTTG CAGGAAACTA 
    TAATGGAGCT CTTCAAGTGA TGAGTGCAGA GTTTCAAGTT CCATCTCCAT 
    TAGTCCCAAC ACGTGAAACC TATTTCGCAC GTTACTGTAA ACAACAAGGA 
    GATGGTTCGT GGGCGGTTGT CGATATTTCG TTGGATAGTC TCCAACCAAA 
    TCCCCCGGCT AGATGCAGGC GGCGAGCTTC AGGATGTTTG ATTCAAGAAT 
    TGCCAAATGG ATATTCTAAG GTGACTTGGG TGGAGCATGT GGAAGTTGAT 
    GACAGAGGAG TTCATAACTT ATACAAACAC ATGGTTAGTA CTGGTCATGC 
    CTTTGGTGCT AAACGCTGGG TAGCCATTCT TGACCGCCAA TGCGAGCGGT 
    TAGCTAGTGT CATGGCTACA AACATTTCCT CTGGAGAAGT TGGCGTGATA 
    ACCAACCAAG AAGGGAGGAG GAGTATGCTG AAATTGGCAG AGCGGATGGT 
    TATAAGCTTT TGTGCAGGAG TGAGTGCTTC AACCGCTCAC ACGTGGACTA 
    CATTGTCCGG TACAGGAGCT GAAGATGTTA GAGTGATGAC TAGGAAGAGT 
    GTGGATGATC CAGGAAGGCC TCCTGGTATT GTTCTTAGTG CAGCCACTTC 
    TTTTTGGATC CCTGTTCCTC CAAAGCGAGT CTTTGACTTC CTCAGAGACG 
    AGAATTCAAG AAATGAGTGG GATATTCTGT CTAATGGAGG AGTTGTGCAA 
    GAAATGGCAC ATATTGCTAA CGGGAGGGAT ACCGGAAACT GTGTTTCTCT 
    TCTTCGGGTA AATAGTGCAA ACTCTAGCCA GAGCAATATG CTGATCCTAC 
    AAGAGAGCTG CACTGATCCT ACAGCTTCCT TTGTGATCTA TGCTCCAGTC 
    GATATTGTAG CTATGAACAT AGTGCTTAAT GGAGGTGATC CAGACTATGT 
    GGCTCTGCTT CCATCAGGTT TTGCTATTCT TCCTGATGGT AATGCCAATA 
    GTGGAGCCCC TGGAGGAGAT GGAGGGTCGC TCTTGACTGT TGCTTTTCAG 
    ATTCTGGTTG ACTCAGTTCC TACGGCTAAG CTGTCTCTTG GCTCTGTTGC 
    AACTGTCAAC AATCTAATAG CTTGCACTGT TGAGAGAATC AAAGCTTCAA 
    TGTCTTGTGA GACTGCTTGA AAACCATCCA TTAGGAAATA ACAAAATGGT 
    GATGATGGAA AAAAGAGAGA GATTTCAGTT TGAGAAAAGC GGAGGAGTCA 
    AGATCGAACC TCACAAGAGA ATACCATTGA GTGTTTGTTA GTGTTAAGTT 
    TTGGTCTGCT TATTTGATGA AACTAAGCAG TGAAAAACTT TTTACTTGAA 
    AGTGAATATG TAGATGGTTT TACGAGGTTC GGGAATTTGA CTTCCCCTGT 
    CACATACTGA ATTAGACAAA AACAAAAACT AGGTTAGAAA GAATGCTTTC 
    GGATTTCTTT TTGTGTTACA GTTACTGTTT TTCTTTCCTT CTTGTGGTTA 
    GATGGACCAT CATCAGGAAT TTGGAGTTTG TCTTTCTTTT GTATAAATAT 
    CTTATACAAG TATTTTGGTA CTTTTGT

    Gene models with high sequence identity

    1. AT1G05230.1 [+] show detail - homeodomain GLABROUS 2
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 1.5e-19
    PatternScan Homeobox, conserved site 0
    HMMSmart Homeobox 6.5e-18
    HMMSmart Lipid-binding START 2e-62
    Gene3D Homeodomain-related 8.9e-17
    HMMPanther PAIRED-LIKE HOMEOBOX PROTEIN PEPP 3.7e-13
    HMMPanther HOMEOBOX PROTEIN 3.7e-13
    ProfileScan Homeobox 16.374
    ProfileScan Lipid-binding START 41.633
    HMMPfam Lipid-binding START 5.7e-67
    HMMPfam Homeobox 9.7e-17
    Coil coiled-coil 0

    See the detailed result >

    AT1G05230.1

    Model type
    Protein coding
    Short Description
    homeodomain GLABROUS 2
    Curator Summary
    Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
    Computational Description
    homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0; Bacteria - 0; Metazoa - 6110; Fungi - 222; Plants - 2153; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR