F16539

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16539

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16539

Determination of introduced cDNA(s)

  • RAFL09-60-O15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-60-O15 - Resource: pda09857

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-60-O15 - full reading 
    GGGTTTCTCA GCTGAAATCA AAATGGGTAT TATCAGATTT CAAATCCTGA 
    ATCCGACGAG GATTTGTAGG TCTACTATAT ATTATATGTC TTGCCGTTAT 
    CTGCCATCAT CATCATCATC ATCATCACCA CTCCGAGTAT CTTCTTCTTC 
    ATCGCAAAAA CCTAGTTTCG ATTTCTCCAG AAGGTGGCAT TTTGGTCACC 
    CTGATCATCA CCAGCAATAT CAAAAGCCTG GAGAAGAAGG GGAGAAGATA 
    TTCCGGCTAG GTCTCACCGC AGATATAGGT TTATCTGTCG CAAAAGCTCT 
    CACCGGTTAT CTCTGCGGCA GCACCGCCAT TATCGCCGAT GCTGCTCATT 
    CCGTTTCCGA TGTGGTTCTA AGTGGTGTTG CTCTAGTGTC TTACAGAGCT 
    GCAAATGTTC CCAAGGACAA AGAACATCCT TATGGTCATG GTAAATTTGA 
    AACGCTTGGA GCACTTGGCA TCTCTGCCAT GCTTTTGGCT ACTGGCTCTG 
    GTATTGCCTG GCATGCTTTA GACCTTTTAT CTATTGCACT GTCCGCAGCT 
    CCTGAGGTAA TTCATAGTGG ACATCATCAC GGCATTGATA TGAATCATCC 
    CATTCTCGCT TTGACTGTTA CTATTGCTTC CATTTCTATC AAAGAAGGGC 
    TTTATTGGAT CACAAAACGA GCAGGTGAAA AACAAGGGAG TGGTTTGATG 
    ATGGCAAATG CTTGGCATCA TCGATCAGAT GCTATTTCTT CTCTAGTTGC 
    ACTTGTTGGA GTTGGAGGTT CTATTCTCGG AGTTAATTTT TTAGATCCTC 
    TAGCTGGCCT TGTTGTCTCG ACAATGATTG TCAATGCCGG ACTGAAAACA 
    GGACACCAAA GTATCTTGGA ACTCGTGGAT GCTGCTATAC CAGCTCAGCA 
    ATTAGAGCCA ATAAGACAAA CCATATTACA GGTTGAAGGA GTGAAGGGAT 
    GTCATCGGCT AAGGGGTAGG AGAGCTGGTT CATCGTTGTA TCTTGATGTA 
    CACATTGTGG TAGATCCTTT TTCCAGTGTG AGTGTCGCAC ATGAGGTAGG 
    AGAATATGTA CGGAGACAGA TTAATTTGAA CCATCCTGAA GTGTCCGAAG 
    TTTTTATTCA TATAGATCCA GCCTTTTTAC AGTTTTCTTG TAGCACCAAG 
    GATCATGACA GTATAACGAA GGAAAGTAAC ATCTGCCAAG AGATTAAACA 
    TGTTGAAGCC ACTGTCTCAG ACATTTTTTC GTCGCAGTTG TCTGAGAAAT 
    TGACGATCAA ACGAATTACA CCCCACTTGT TACATAGCAA GATCTTGCTC 
    CAAATCGTAG TCGCCATGCC ATCAACCATG TCCATACAGG ACGTCATGAT 
    AGCTGCTGAA CATGCAGAGA AAGAGATTCT GAAGGCAGCC CCAAATGTGG 
    CTCGTGTCAG CATTCAGCTT AGTCTTAACT CCGAATAACT TTGAAGGAAA 
    TAACAAGAGA AGACCCCTCT GCAATGGCTG CAACAACTAT AATTTTTAAA 
    AAAAGAAATA CAGTGCGCTA ACTATGTTCA TACTGATTGT CAATATTTTG 
    TTGATATTTC TGGCTTTCTT TACACTGCTC ATCGAAGTTG TTTCTTTCTG 
    ATGAGCAATT TAATCTCGAA AATTTGCAAC TTGATGATTC CAAAGCTGAG 
    AAAAGTTTTG GGAATGTAA

    Gene models with high sequence identity

    1. AT2G47830.1 [+] show detail - Cation efflux family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan PROKAR_LIPOPROTEIN 5
    HMMPfam Cation efflux protein 1.8e-59
    HMMTigr Cation efflux protein 6.7e-79
    HMMPanther Cation efflux protein 4.8e-69

    See the detailed result >

    AT2G47830.1

    Model type
    Protein coding
    Short Description
    Cation efflux family protein
    Computational Description
    Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT3G58060.1); Has 9484 Blast hits to 9472 proteins in 2416 species: Archae - 234; Bacteria - 7791; Metazoa - 296; Fungi - 408; Plants - 276; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR