F16605

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16605

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16605

Determination of introduced cDNA(s)

  • RAFL05-21-F01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-F01 - Resource: pda01369

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-F01 - full reading
    GCACACAAAG TTTGCTTGCC TTCTGGGCTT CACGATTCTC ACGACATCTG 
    TTTATCTTCT CCGATTTCCA CGTCCATGGA TCTCAGTCAA TGTTCCTTAA
    TCTCTCTTTT CGATTAGTCC AATCTCCACT AATCTCTGAC CTCAGATCGC
    TTCCGACGCC GCTGAACTGT GTCCGTCTTG ATCTGTGTTT AGGAGAAAGC
    TTCTAGGGTT TTTGTTTTGG TTGCTGAGTA GAATTTGTTG GATCTGAAAC
    GGAAATCAAA ATGGGCTTTT TCAGTACGAT ACTAGGATTT TGTGGATTTG
    GAGTTGGGAT TTCATTGGGA CTTGTTATTG GTTACGTTCT CTTCGTCTAC
    TTGCTCCCCA ACGACGTCAA GGATCCTGAA ATTCGTTCAA TAGCTGACCA
    AGATCCCAAA GCTATGCTAC GGATGCTTCC AGAGATACCT CTATGGGTCA
    AAAATCCGGA TTTCGATCGT GTTGACTGGA TAAACAGATT TCTCGAGTAC
    ATGTGGCCTT ATCTCGACAA GGCCATATGT AAGACTGCAA AGAATATAGC
    AAAACCGATC ATTGAGGAGC AGATACCAAA GTACAAGATT GACTCTGTTG
    AATTTGAAAC GCTTACTCTA GGCTCTTTAC CCCCTACATT TCAAGGGATG
    AAAGTTTATC TCACGGATGA GAAAGAGTTG ATTATGGAAC CATGCTTGAA
    ATGGGCCGCA AATCCCAATA TCTTGGTTGC CATCAAGGCA TTTGGGTTGA
    AGGCAACAGT TCAGGTGGTC GATCTGCAAG TTTTTGCTCA GCCTCGTATC
    ACTCTCAAGC CATTAGTTCC AAGTTTCCCT TGTTTTGCCA ATATCTATGT
    GTCTCTTATG GAGAAGCCAC ATGTTGATTT TGGACTGAAG CTTGGTGGAG
    CAGATCTTAT GTCAATCCCT GGCCTCTACA GATTTGTTCA GGAGCAAATC
    AAGGATCAAG TTGCGAACAT GTATCTCTGG CCTAAGACCC TTGTAGTTCC
    AATCCTTGAC CCTGCAAAGG CGTTCAGAAG GCCTGTTGGA ATTGTCCATG
    TGAAAGTTGT GAGGGCTGTG GGGCTGAGGA AAAAAGATCT GATGGGCGGG
    GCAGATCCAT TCGTGAAAAT CAAGCTCTCT GAAGATAAGA TTCCTTCTAA
    GAAGACAACA GTTAAACACA AGAATTTGAA TCCTGAATGG AATGAGGAGT
    TCAAATTCTC GGTCAGAGAT CCCCAGACTC AGGTTCTAGA GTTCAGTGTG
    TATGACTGGG AACAGGTTGG GAATCCCGAG AAGATGGGTA TGAATGTATT
    AGCTCTGAAA GAAATGGTGC CTGACGAACA TAAAGCATTC ACCTTGGAAC
    TGCGTAAGAC TCTGGACGGC GGTGAAGATG GGCAGCCTCC TGACAAGTAT
    AGGGGGAAGC TGGAGGTTGA ACTCTTGTAT AAGCCATTCA CGGAGGAAGA
    AATGCCCAAA GGCTTTGAAG AAACGCAAGC CGTGCAGAAA GCTCCAGAAG
    GCACACCGGC TGCTGGAGGA ATGCTTGTGG TAATAGTGCA TTCGGCTGAG
    GATGTTGAAG GAAAGCACCA TACCAATCCT TACGTGCGCA TCTATTTCAA
    AGGAGAAGAG AGAAAAACAA AGCACGTGAA GAAGAACAGA GACCCAAGGT
    GGAATGAGGA GTTCACCTTT ATGCTCGAGG AGCCTCCAGT CCGTGAGAAG
    CTGCACGTTG AAGTGCTGAG CACCTCTTCC AGGATAGGTC TATTGCATCC
    CAAGGAAACA CTGGGGTATG TGGATATTCC AGTGGTGGAC GTGGTGAACA
    ACAAAAGGAT GAATCAGAAG TTTCACCTTA TTGATTCTAA GAACGGAAAG
    ATCCAAATCG AGCTCGAGTG GCGAACTGCC TCTTGATTTC TGAGTTGATT
    CGAGAACAAA CAAAGAGATA ATTGGTTTGA TGTTGTTAAG AACTATGTGT
    TGTTGTACAA AATGGGCTTT AACTCTTAAA AACCAACATT CAGATTTGCC
    AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT2G20990.1 [+] show detail - synaptotagmin A
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CALCIUM LIPID BINDING PROTEIN 2.3e-233
    HMMPanther CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB 2.3e-233
    ProfileScan C2 membrane targeting protein 16.465
    ProfileScan C2 membrane targeting protein 12.099
    ProfileScan Transcription regulator SCAN 8.526
    Gene3D no description 8.1e-26
    Gene3D no description 7.6e-22
    HMMPfam C2 calcium-dependent membrane targeting 3.3e-23
    HMMPfam C2 calcium-dependent membrane targeting 1.9e-13
    superfamily C2 calcium/lipid-binding domain, CaLB 4.3e-32
    superfamily C2 calcium/lipid-binding domain, CaLB 1.2e-24
    FPrintScan C2 region 3e-07
    FPrintScan C2 region 3e-07
    FPrintScan C2 region 3e-07
    HMMSmart C2 calcium-dependent membrane targeting 2.5e-21
    HMMSmart C2 calcium-dependent membrane targeting 9.1e-14

    See the detailed result >

    AT2G20990.1

    Model type
    Protein coding
    Short Description
    synaptotagmin A
    Curator Summary
    Encodes a plasma membrane localized protein with similarity to synaptotagmins, a class of membrane trafficking proteins. SYT1 is expressed in all tissues. Loss of function mutations show hypersensitivity to NaCl and electrolyte leakage from the plasma membrane. SYT1 also affects calcium dependent freezing tolerance. SYT1 probably plays a role in membrane repair such as membrane resealing after freezing induced damage. Regulates endocytosis endosome recycling at the plasma membrane, but not membrane traffic along the secretory pathway.
    Computational Description
    synaptotagmin A (SYTA); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 7 processes; LOCATED IN: endosome, plasma membrane, vacuole, membrane; EXPRESSED IN: whole plant, guard cell, cultured cell, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G20080.1); Has 7068 Blast hits to 5182 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 4491; Fungi - 774; Plants - 1307; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR