F16610

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16610

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16610

Determination of introduced cDNA(s)

RAFL09-96-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-96-L08 - Resource: pda17929

full reading [+] show sequence

GAATTAGGAG AAGGAACAAA AGAAGATGGA ATCTGGAAGT ATGAAAACAC 
CTCTGGTGAA TAATCAAGAA GAAGCAAGAA GCTCTTCTTC CATCACTTGT 
GGTCTTCTTC TTAGTACCTC CGTCGCTGTC ACTGGCTCTT TCGTTTATGG 
CTGCGCTATG TCATATTCAT CGCCTGCTCA GTCCAAAATC ATGGAAGAAC 
TGGGACTTTC CGTTGCAGAT TATTCGTTTT TCACATCGGT AATGACATTG 
GGAGGAATGA TTACGGCCGC GTTTAGTGGA AAAATTGCTG CAGTTATTGG 
TCGTCGACAG ACAATGTGGA TCGCGGATGT TTTCTGCATC TTTGGTTGGC 
TCGCTGTAGC CTTTGCACAT GATAAAATGC TGTTAAATAT TGGTCGAGGC 
TTCTTGGGGT TTGGGGTTGG TCTCATTAGT TATGTGGTTC CTGTATATAT 
AGCAGAAATT ACGCCCAAAG CATTTCGTGG AGGATTCTCT TTTTCCAATC 
AACTTCTACA AAGTTTTGGG ATATCGCTCA TGTTCTTCAC CGGAAACTTT 
TTTCATTGGA GAACATTAGC TCTTTTAAGT GCAATCCCAT GTGGTATCCA 
AATGATATGT TTATTTTTTA TTCCTGAATC ACCTAGATGG CTGGCTATGT 
ATGGTAGAGA ACGAGAGCTT GAGGTTACTT TGAAGAGGCT AAGAGGAGAA 
AATGGTGATA TTCTCGAAGA AGCAGCTGAA ATCAGAGAAA CAGTGGAAAC 
CTCTAGAAGA GAATCTCGAA GTGGACTAAA AGATTTGTTC AATATGAAAA 
ACGCACATCC GTTAATCATT GGATTGGGCC TAATGCTCTT GCAACAATTT 
TGTGGGAGTT CGGCGATAAG TGCTTATGCT GCTCGTATTT TCGACACAGC 
CGGTTTTCCA AGCGACATAG GAACATCCAT CCTTGCAGTT ATTTTGGTAC 
CGCAATCTAT TATTGTCATG TTTGCCGTCG ACCGATGTGG ACGCCGACCA 
CTTTTGATGA GCTCTTCTAT CGGTCTGTGC ATATGTTCAT TTTTAATTGG 
CCTCTCTTAC TATCTTCAGA ACCATGGTGA TTTTCAAGAG TTTTGTTCCC 
CTATCTTAAT CGTCGGTTTA GTGGGTTATG TCTTATCCTT TGGCATTGGT 
CTAGGTGGAC TACCATGGGT TATTATGTCT GAGGTGTTTC CGGTGAATGT 
GAAAATTACC GCCGGTAGTC TTGTAACAGT GTCAAACTGG TTTTTTCAGT 
TGGATTATCA TTTTCAGTTT TAATTTCATG ATGCAATGGA GTGCTTTCGG 
AACATATTTC ATATTTGCTG GAGTTTCTCT GATGTCATTC GTATTTGTAT 
GGACTTTGGT GCCTGAGACG AAAGGCCGAA CACTTGAAGA TATTCAACAA 
TCACTAGGCC AACTTTCATA AATCCAAAGT TGATTCTTTA CTCCACAATG 
CCAGACATTG TTCTTTTATG TTACATTTAT AAGTCATGTA TTATCCGATT 
TGGAGGGGGG GGATATGGAT TTCCGAATTT TTTTACTTTG ATAAATTTTG 
TCAATATATT TTGTTGACAG AAAAAAGAAT AATCAATATA CTGTATGTGG 
TATTATTCTA ACAATATTTT TTAAACGTAT AATATGATTA TGTACCAATA 
TTTATAATCA AAAAAAAAA

Gene models with high sequence identity

AT1G08890.1 [+] show detail - Major facilitator superfamily protein
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
superfamily	Major facilitator superfamily, general substrate transporter	1.1e-48
PatternScan	Sugar transporter, conserved site	0
ProfileScan	MFS	27.796
FPrintScan	Sugar/inositol transporter	1e-12
FPrintScan	Sugar/inositol transporter	1e-12
FPrintScan	Sugar/inositol transporter	1e-12
FPrintScan	Sugar/inositol transporter	1e-12
Coil	coiled-coil	0
HMMPanther	SUGAR TRANSPORTER PLANT	1.9e-19
HMMPanther	SUGAR TRANSPORTER	1.9e-19
HMMPanther	SUGAR TRANSPORTER PLANT	2.4e-169
HMMPanther	SUGAR TRANSPORTER	2.4e-169
HMMPfam	General substrate transporter	9.1e-75
HMMPfam	General substrate transporter	8.3e-10

See the detailed result >

AT1G08890.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08900.2); Has 22268 Blast hits to 21798 proteins in 1696 species: Archae - 379; Bacteria - 7327; Metazoa - 4739; Fungi - 6227; Plants - 2471; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).
Link: InterPro Scan - TAIR