F16627

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16627

Determination of introduced cDNA(s)

  • RAFL04-16-F14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-F14 - Resource: pda00652

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-F14 - full reading 
    CCGAAACTCG TCTGAGAGAG GCTCTGAGAT TCGATGTCGT TCGAGGAAGA 
    AGAAGAGGAG GAAACATTCG AGCATACACT TCTCGTGGTG CGTGAGGTCT 
    CCGTTTACAA GATCCCGCCG CGAACCACAT CCGGCGGATA CAAGTGCGGC 
    GAATGGCTTC AATCCGATAA GATCTGGTCT GGTAGACTCC GCGTCGTATC 
    GTGCAAGGAT CGATGCGAGA TCCGCCTCGA GGATTCGAAT TCCGGTGATC 
    TTTTCGCAGC TTGTTTTGTG GATCCTGGAC GTAGAGAGAA CTCTGTAGAG 
    CCGTCTCTCG ATTCGTCTAG GTATTTCGTT CTCAGGATCG ATGACGGGAG 
    AGGGAAGTAT GCGTTTATCG GGCTAGGATT CGCTGAGAGG AACGAAGCGT 
    TTGATTTCAA TGTTGCGTTA TCGGATCATG AAAAGTACGT TAGGAGGGAG 
    AAAGAGAAGG AGACAGGGGA AACGAGTGAG AGCGATAATC ATATTGATAT 
    CCATCCTGCC GTTAATCACA GATTGAAGGA AGGTGAAACC ATAAGAATCA 
    ACGTGAAGCC GAAACCAACA ACAAATGGCA CTGGGATGCT CTCAGCTGCT 
    CTTTCAGGAA CGGGGAAGCC AAAACCTCTA GCACTTGCCC CACCCCCCAA 
    AGCTGCCGGA GTAACCAGGT CTCCTTTACC TCCTCCTCCA AACGATCCCG 
    TCGCTTCAAG GATTGCATCT GATGGCTGCA AGGAATCACG CAGGAACGAG 
    CCTCTATCTG ATCTATCTCA GCTCAAAAAA TCTTCCTTCA ACGGCGGGAT 
    CAGGATCGAG CAAGTCAACA GGAGCTGCAT CAGGTTGGGC AGCTTTCTGA 
    TGAATGGAGT GTAAAATTTA AGTTATTGGA CAAGTCCGGC TTCATCTTCT 
    TGTGACTTGA GAGCACGAGA CAATAGACAA CAATGGTGGT CAGCCAACAG 
    TCTTTTTGAT GTATGTTAAT GGTAAGTTGA TGTGTGTTTC TTTGTAATCC 
    TCCCACACTC CCTGTTTTAA TTATTTTTCT TCCTTATAAT CATCGTTGTT 
    ACATTATCGA TTATCATTTG TATCACTGAG ATATTAATAT ATACAAAAAG 
    GCTTTTT

    Gene models with high sequence identity

    1. AT1G03900.1 [+] show detail - non-intrinsic ABC protein 4
      E-value: 0; Score: 99.82

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ATP-BINDING CASSETTE (ABC) TRANSPORTER-RELATE 1.5e-91
    HMMPfam Adaptin ear-binding coat-associated protein 1 NECAP-1 2.5e-55

    See the detailed result >

    AT1G03900.1

    Model type
    Protein coding
    Short Description
    non-intrinsic ABC protein 4
    Curator Summary
    member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.
    Computational Description
    non-intrinsic ABC protein 4 (NAP4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: extracellular transport; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: Adaptin ear-binding coat-associated protein 1 NECAP-1 (TAIR:AT3G58600.1); Has 448 Blast hits to 448 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 61; Plants - 115; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR