F16817

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16817

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16817

Determination of introduced cDNA(s)

  • RAFL06-73-G23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-73-G23 - Resource: pda03442

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-73-G23 - full reading 
    GAGAGATCTC TGGCTCTGTA TCGCTCGCTG CTCTTCCTCC CACAGATCGA 
    AAACCATGAA TCCTGAGTAC GACTATCTTT TCAAGCTCCT GCTTATCGGG 
    GATTCTGGCG TAGGCAAGTC TTGTCTTCTT TTGAGATTCT CTGATGATTC 
    TTATGTAGAA AGTTACATTA GCACTATTGG AGTCGATTTT AAAATTAGGA 
    CTGTGGAACA AGATGGCAAA ACAATTAAGC TCCAAATTTG GGACACTGCT 
    GGTCAAGAAC GGTTCAGGAC TATTACTAGC AGTTACTACC GTGGGGCACA 
    TGGAATTATT ATTGTCTACG ATGTCACAGA TGAAGAAAGC TTCAATAATG 
    TCAAGCAATG GTTGAGTGAA ATTGATCGTT ATGCTAGTGA CAATGTCAAC 
    AAACTCCTTG TTGGAAACAA GTCTGATCTT ACTGAAAACA GAGCCATTCC 
    TTATGAAACT GCCAAGGCTT TTGCCGATGA AATCGGGATT CCTTTTATGG 
    AGACTAGTGC AAAAGATGCT ACAAACGTAG AACAGGCTTT CATGGCAATG 
    TCTGCATCCA TCAAAGAGAG AATGGCTAGC CAACCAGCTG GGAATAATGC 
    AAGACCACCG ACCGTGCAGA TCAGAGGACA GCCTGTGGCA CAGAAGAACG 
    GCTGCTGCTC AACTTGATTG ACGTGACCAG CCTAGCAATA TCCTTTCCAA 
    TCTTAGAACA CGTGTTCCTT CTTTTGACTA GGCTCCAATT CACTACTACT 
    TGGTTTTTAC ACAACATCCC CCCAAATCTG TCTTGTCTGT AATTAAGCTC 
    CTTTGGTTGG TTATTAAAAA G

    Gene models with high sequence identity

    1. AT1G02130.1 [+] show detail - RAS 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ras GTPase 6.4e-46
    FPrintScan Ras GTPase 6.4e-46
    FPrintScan Ras GTPase 6.4e-46
    FPrintScan Ras GTPase 6.4e-46
    FPrintScan Ras GTPase 6.4e-46
    HMMTigr Small GTP-binding protein 2.9e-34
    HMMSmart ADP-ribosylation factor 0.0017
    HMMSmart Ras small GTPase, Ras type 2.5e-34
    HMMSmart Ras small GTPase, Rab type 3.9e-108
    HMMSmart Small GTPase, Rho type 1.2e-17
    HMMSmart Ran GTPase 5.4e-05
    ProfileScan Small GTPase 39.209
    HMMPanther RAS-RELATED PROTEIN RAB-1 1.6e-95
    HMMPanther RAS-RELATED GTPASE 1.6e-95
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-70
    Gene3D no description 2.5e-69
    HMMPfam Ras 9e-67

    See the detailed result >

    AT1G02130.1

    Model type
    Protein coding
    Short Description
    RAS 5
    Curator Summary
    Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.
    Computational Description
    RAS 5 (RA-5); FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion, ER to Golgi vesicle-mediated transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A (TAIR:AT5G47200.1); Has 30420 Blast hits to 30350 proteins in 816 species: Archae - 27; Bacteria - 199; Metazoa - 15882; Fungi - 4318; Plants - 3658; Viruses - 20; Other Eukaryotes - 6316 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR