F16839

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16839

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F16839

Determination of introduced cDNA(s)

  • RAFL06-80-L04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-80-L04 - Resource: pda17241

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-80-L04 - full reading 
    CCCACCCAAA ACTGTGAAAT CGAGCAGCAT ACTCTTCCTG ATGGACAGGT 
    GATAAGCATC GGGCGAGAGA GATACTCGGT TGGAGAAGCT CTGTTTCAGC 
    CATCAATACT GGGACTGGAG GAGCATGGAA TCGTTGAGCA GCTTGTCCGG 
    ATTATCTCCA CAGTGTCATC TGAGAACCAT AGGCAGCTCT TGGAGAACAC 
    TGTACTTTGT GGTGGTACAA CCTCCATGAC AGGATTCGAA AGTAGATTCC 
    AGAAAGAAGC AAACTTGTGC TCATCTGCCA TTAGGCCAAC ACTGGTGAAA 
    CCGCCAGAAT ATATGCCGGA GAATTTGGGG ATGTATTCGG CTTGGGTTGG 
    AGGAGCCATA CTAGCTAAAG TGGTGTTTCC GCAGAATCAG CACGTTACTA 
    AAGCAGATTA TGACGAGACT GGACCATCAG TGGTTCACAG GAAATGTTTC 
    TGAAACCATA GACTATAAAA CGATGTTGTT GTTGTAGCTG AGGATTTTTT 
    TTTTGGTTGG CTTTGGTTTG AAGATGTGGA CCAGATTATG TAGTACATTT 
    CAAATTATGG CTTCCAAATA TCGACTAATA TGTGTTCAAT GAGCCCTTTT 
    CTGAAAACAT GGAAAAAAAA AA

    Gene models with high sequence identity

    1. AT3G60830.1 [+] show detail - actin-related protein 7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ACTIN-RELATED PROTEIN 2.6e-124
    HMMPanther Actin/actin-like 2.6e-124
    HMMPfam Actin/actin-like 2.1e-34
    superfamily Actin-like ATPase domain 6.2e-35
    Gene3D no description 1.7e-14
    Gene3D no description 1.3e-07

    See the detailed result >

    AT3G60830.1

    Model type
    Protein coding
    Short Description
    actin-related protein 7
    Curator Summary
    Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission.
    Computational Description
    actin-related protein 7 (ARP7); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 12219 Blast hits to 11995 proteins in 2504 species: Archae - 0; Bacteria - 50; Metazoa - 5224; Fungi - 3189; Plants - 1407; Viruses - 2; Other Eukaryotes - 2347 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR