F17234

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17234

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17234

Determination of introduced cDNA(s)

  • RAFL09-48-D13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-D13 - Resource: pda06376

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-D13 - full reading 
    ATCTTCTCTG GAAACTGAAA ACTATGGCTT TCTCTTCATG TCTCAAATTC 
    TATCCATTTT CTATCTCTCA AGCTGTAACC CTAACTCATC ATTCCTTCTC 
    TCTCAATCTA ACTCCTCCTT CTTCTACCAT CTCCTTCGCT TCTCCTCACT 
    CAGCAGCTCT CTCCTCTACC GATGTCAAGC TTCTCGACTC ACTCCGTAGC 
    CAGCCTGATG ATTCCGCCGC ACTTCGTCTC TTTAATCTGG CCTCTAAGAA 
    GCCAAATTTC TCACCTGAAC CTGCTCTATA CGAAGAGATT CTCCTTCGGC 
    TAGGTCGGTC TGGTTCGTTT GATGACATGA AGAAAATTCT TGAAGACATG 
    AAGAGTTCCA GATGCGAAAT GGGTACTTCT ACTTTCTTGA TATTAATCGA 
    GAGTTATGCT CAGTTCGAAT TGCAAGATGA GATTTTAAGT GTTGTTGATT 
    GGATGATTGA CGAATTCGGG TTAAAACCCG ATACCCATTT TTATAACCGG 
    ATGTTGAATC TTCTCGTTGA TGGGAATAGT CTGAAACTCG TTGAGATTTC 
    TCACGCGAAG ATGAGTGTCT GGGGGATTAA ACCAGATGTA TCTACGTTTA 
    ATGTTTTGAT CAAAGCTTTG TGTAGAGCTC ATCAGCTTAG ACCTGCGATT 
    TTGATGTTGG AGGATATGCC TAGTTACGGT CTTGTTCCTG ATGAGAAGAC 
    ATTTACAACG GTTATGCAAG GCTATATTGA AGAAGGGGAC TTGGATGGAG 
    CTTTGAGGAT TAGGGAACAG ATGGTTGAGT TTGGTTGTTC ATGGTCTAAT 
    GTGAGTGTTA ATGTTATTGT TCATGGTTTT TGTAAGGAAG GGAGAGTCGA 
    AGACGCTCTC AATTTCATTC AGGAGATGTC TAATCAAGAC GGGTTTTTTC 
    CGGATCAGTA CACGTTTAAT ACGTTAGTTA ATGGTTTGTG TAAAGCAGGG 
    CATGTGAAGC ATGCTATTGA GATTATGGAT GTGATGCTTC AAGAAGGGTA 
    TGATCCAGAT GTGTATACTT ATAACTCGGT GATTTCGGGT TTGTGTAAGC 
    TTGGAGAGGT GAAAGAAGCA GTGGAGGTTC TTGATCAGAT GATTACTAGA 
    GATTGTTCTC CGAACACGGT TACTTACAAC ACTTTGATCA GCACGTTATG 
    TAAAGAGAAT CAGGTCGAGG AAGCTACGGA GCTTGCCCGT GTTCTCACCA 
    GCAAAGGGAT CCTTCCTGAC GTTTGTACAT TTAACTCTTT GATCCAAGGT 
    TTGTGTTTGA CTAGGAATCA CCGGGTTGCG ATGGAGTTGT TTGAAGAGAT 
    GAGGAGCAAA GGATGTGAGC CTGACGAGTT CACTTACAAT ATGCTGATTG 
    ATAGCTTATG CTCCAAAGGG AAGCTAGATG AAGCTCTGAA CATGCTTAAA 
    CAAATGGAAT TGAGTGGTTG TGCACGGAGT GTGATAACTT ACAACACTTT 
    GATTGATGGG TTTTGCAAAG CCAACAAGAC TAGAGAAGCC GAGGAGATAT 
    TTGATGAGAT GGAAGTACAT GGAGTTTCAA GAAACTCTGT TACATACAAC 
    ACACTCATCG ATGGGCTTTG TAAAAGCAGG CGAGTAGAGG ACGCGGCTCA 
    GCTCATGGAT CAAATGATTA TGGAAGGACA GAAACCTGAC AAGTACACAT 
    ACAACTCGCT TTTAACACAT TTCTGCAGAG GAGGTGACAT AAAGAAAGCT 
    GCGGATATCG TGCAAGCCAT GACCTCAAAT GGGTGTGAAC CAGACATTGT 
    GACCTATGGA ACCTTGATAA GCGGTTTGTG TAAAGCTGGT AGAGTTGAAG 
    TTGCAAGTAA GCTTTTGAGG TCAATTCAGA TGAAAGGGAT TAATTTGACA 
    CCGCATGCTT ATAATCCGGT GATTCAAGGG TTGTTTAGAA AGAGGAAAAC 
    AACAGAAGCT ATAAATTTGT TTAGAGAAAT GCTTGAACAG AATGAAGCTC 
    CACCAGATGC AGTATCCTAC AGAATCGTTT TCCGTGGGCT ATGTAATGGA 
    GGTGGACCAA TCCGTGAAGC AGTGGACTTT CTTGTTGAGC TGTTAGAGAA 
    AGGATTTGTA CCTGAGTTTT CTTCTTTGTA CATGTTGGCT GAAGGTCTTC 
    TCACTTTGTC AATGGAAGAA ACACTAGTCA AGTTAGTGAA CATGGTGATG 
    CAGAAAGCTA GATTCTCGGA GGAAGAGGTT TCAATGGTGA AAGGTTTGCT 
    TAAAATCAGG AAATTTCAGG ACGCTTTGGC CACTCTTGGC GGCGTCTTGG 
    ACAGTCGCCA GCCGAGGAGA ACCTACCGGT CAAGATGATA GATACCTTTA 
    GAAAAAGTAT CGTTCCCAAT TTCGTAGAAG ATATGTATGA TGTTATGAAT 
    ATGATTTCCT ATAAAGTTTT GGGGTAATTC ATCCATTTAA TAC

    Gene models with high sequence identity

    1. AT3G53700.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Pentatricopeptide repeat 7.991
    ProfileScan Pentatricopeptide repeat 6.456
    ProfileScan Pentatricopeptide repeat 11.488
    ProfileScan Pentatricopeptide repeat 7.169
    ProfileScan Pentatricopeptide repeat 10.654
    ProfileScan Pentatricopeptide repeat 9.438
    ProfileScan Pentatricopeptide repeat 12.858
    ProfileScan Pentatricopeptide repeat 14.02
    ProfileScan Pentatricopeptide repeat 11.948
    ProfileScan Pentatricopeptide repeat 13.022
    ProfileScan Pentatricopeptide repeat 12.671
    ProfileScan Pentatricopeptide repeat 13.022
    ProfileScan Pentatricopeptide repeat 13.57
    ProfileScan Pentatricopeptide repeat 12.463
    ProfileScan Pentatricopeptide repeat 11.466
    ProfileScan Pentatricopeptide repeat 10.501
    ProfileScan Pentatricopeptide repeat 10.073
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.5e-187
    HMMPfam Pentatricopeptide repeat 0.0035
    HMMPfam Pentatricopeptide repeat 5.4e-05
    HMMPfam Pentatricopeptide repeat 6.4e-05
    HMMPfam Pentatricopeptide repeat 1.2e-06
    HMMPfam Pentatricopeptide repeat 4.8e-09
    HMMPfam Pentatricopeptide repeat 0.00013
    HMMPfam Pentatricopeptide repeat 1.3e-07
    HMMPfam Pentatricopeptide repeat 2.6e-08
    HMMPfam Pentatricopeptide repeat 1.1e-10
    HMMPfam Pentatricopeptide repeat 5e-08
    HMMPfam Pentatricopeptide repeat 3.5e-05
    HMMPfam Pentatricopeptide repeat 1.8e-06
    HMMPfam Pentatricopeptide repeat 0.00066
    superfamily TPR-like 1e-23
    superfamily TPR-like 3.5e-18
    HMMTigr Pentatricopeptide repeat 0.013
    HMMTigr Pentatricopeptide repeat 1.4
    HMMTigr Pentatricopeptide repeat 1.6
    HMMTigr Pentatricopeptide repeat 6.2e-07
    HMMTigr Pentatricopeptide repeat 6.1e-06
    HMMTigr Pentatricopeptide repeat 3.8e-07
    HMMTigr Pentatricopeptide repeat 8.8e-10
    HMMTigr Pentatricopeptide repeat 1.1e-11
    HMMTigr Pentatricopeptide repeat 3.1e-07
    HMMTigr Pentatricopeptide repeat 9.1e-11
    HMMTigr Pentatricopeptide repeat 8.2e-10
    HMMTigr Pentatricopeptide repeat 1e-11
    HMMTigr Pentatricopeptide repeat 8.3e-11
    HMMTigr Pentatricopeptide repeat 5.9e-10
    HMMTigr Pentatricopeptide repeat 2.3e-07
    HMMTigr Pentatricopeptide repeat 2.5e-05
    HMMTigr Pentatricopeptide repeat 0.12

    See the detailed result >

    AT3G53700.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    maternal effect embryo arrest 40 (MEE40); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 58723 Blast hits to 15213 proteins in 321 species: Archae - 6; Bacteria - 72; Metazoa - 992; Fungi - 1450; Plants - 53933; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR