F17239

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17239

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17239

Determination of introduced cDNA(s)

  • RAFL09-33-A19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-33-A19 - Resource: pda17699

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-33-A19 - full reading
    TGAGGGATTT GAGTGGTTTT CTTCTTGTCT CTTGCGACTG CAACGATGAC 
    GAGTCTCTTG AAGTCATCGC CTGGACGACG CCGTGGAGGC GATGTGGAGT
    CTGGGAAGAG TGAACACGCA GACTCTGATA GCGACACTTT CTACATCCCA
    TCGAAGAATG CTTCTATTGA GCGGCTTCAA CAGTGGAGAA AAGCTGCACT
    GGTTCTCAAT GCGTCCCGGA GATTCCGGTA CACCTTGGAC TTGAAGAAGG
    AGCAAGAAAC GAGGGAAATG AGACAGAAGA TCAGAAGTCA TGCTCATGCT
    CTTTTGGCGG CGAATCGTTT TATGGATATG GGACGTGAGT CAGGAGTTGA
    AAAAACAACT GGGCCTGCAA CTCCGGCTGG TGATTTTGGA ATTACTCCTG
    AACAGCTTGT GATAATGTCA AAGGATCACA ACAGTGGTGC CCTGGAGCAA
    TATGGAGGGA CTCAAGGATT GGCCAATTTG CTCAAGACAA ATCCAGAGAA
    AGGTATCAGT GGCGATGATG ATGACTTGCT AAAGCGCAAG ACCATTTATG
    GATCAAACAC ATATCCTCGC AAGAAAGGGA AAGGGTTTCT GAGGTTTCTT
    TGGGATGCTT GCCATGATCT CACCTTGATC ATTTTAATGG TTGCTGCTGT
    AGCGTCTTTA GCACTTGGGA TAAAAACAGA GGGTATCAAA GAAGGATGGT
    ATGATGGAGG AAGCATTGCA TTTGCTGTGA TTCTTGTGAT TGTTGTGACG
    GCTGTCAGTG ACTACAAACA GTCGCTCCAG TTTCAAAACT TGAATGATGA
    AAAGAGAAAC ATACATCTGG AGGTGTTAAG AGGTGGAAGA CGAGTGGAGA
    TTTCGATCTA TGACATAGTG GTGGGTGATG TCATTCCTCT CAACATTGGC
    AATCAGGTTC CTGCTGATGG AGTACTGATA TCTGGCCACT CTCTCGCCCT
    TGATGAATCT AGCATGACTG GAGAGAGCAA AATTGTTAAC AAAGACGCTA
    ACAAGGACCC ATTCTTAATG TCTGGCTGTA AAGTGGCAGA TGGAAATGGT
    TCTATGCTGG TTACTGGTGT TGGAGTCAAC ACTGAATGGG GATTGCTGAT
    GGCCAGTATT TCTGAAGACA ATGGTGAAGA AACTCCCTTG CAGGTGCGCT
    TAAATGGGGT AGCTACTTTT ATTGGTTCAA TTGGCTTAGC GGTGGCTGCT
    GCTGTGCTAG TGATTCTTCT GACTCGATAT TTCACTGGTC ACACTAAAGA
    CAATAATGGA GGTCCTCAAT TCGTTAAAGG CAAGACAAAA GTCGGTCATG
    TTATTGATGA TGTGGTCAAA GTCCTTACCG TAGCGGTTAC AATTGTCGTA
    GTGGCAGTGC CTGAGGGTCT TCCTTTGGCT GTTACTTTAA CCCTTGCCTA
    TTCAATGAGG AAAATGATGG CAGATAAGGC TTTGGTGCGG AGGCTATCTG
    CTTGCGAGAC AATGGGCTCT GCCACCACTA TTTGCAGCGA TAAAACTGGA
    ACACTAACTC TGAATCAGAT GACTGTGGTT GAGTCTTATG CTGGGGGCAA
    GAAAACAGAT ACTGAACAAT TGCCAGCAAC TATCACTTCG CTAGTAGTTG
    AAGGAATATC TCAAAACACA ACTGGTAGTA TTTTTGTCCC AGAGGGTGGA
    GGTGATTTAG AGTACTCTGG TTCACCAACA GAAAAGGCCA TTCTTGGCTG
    GGGAGTTAAG CTGGGAATGA ATTTCGAGAC AGCCCGATCG CAGTCTTCTA
    TTCTTCATGC TTTTCCATTT AACTCAGAGA AGAAACGTGG TGGTGTTGCT
    GTAAAAACGG CTGATGGTGA AGTTCATGTT CACTGGAAAG GAGCTTCTGA
    AATTGTCCTG GCATCATGCC GAAGCTACAT CGATGAGGAT GGTAATGTGG
    CACCAATGAC TGACGACAAG GCATCGTTTT TCAAGAATGG CATTAATGAT
    ATGGCTGGAA GAACCTTACG ATGTGTTGCA CTCGCCTTTA GAACCTATGA
    GGCTGAAAAG GTCCCAACAG GCGAAGAGCT CTCAAAGTGG GTACTCCCAG
    AGGATGATCT TATATTATTA GCTATAGTGG GCATAAAGGA TCCATGTAGA
    CCAGGAGTCA AAGATTCAGT TGTGTTGTGT CAAAATGCTG GTGTCAAGGT
    CCGTATGGTT ACTGGTGACA ACGTCCAAAC TGCCAGGGCT ATTGCCTTGG
    AATGTGGAAT ACTAAGTTCA GATGCAGATC TCTCCGAGCC TACTCTCATT
    GAAGGAAAAT CATTCCGTGA GATGACTGAT GCAGAAAGGG ACAAGATTAG
    TGACAAAATA TCGGTTATGG GCCGATCATC TCCCAATGAC AAACTTCTGC
    TGGTACAATC TCTGAGACGA CAAGGGCATG TTGTTGCTGT CACCGGGGAT
    GGGACAAATG ATGCTCCTGC ATTGCACGAG GCAGATATTG GTCTTGCTAT
    GGGAATAGCA GGAACAGAAG TGGCTAAGGA GAGTTCGGAC ATCATCATCT
    TGGATGACAA CTTTGCTTCA GTTGTCAAGG TTGTTCGATG GGGGCGATCA
    GTGTATGCCA ACATTCAGAA GTTCATCCAA TTTCAGCTCA CAGTCAATGT
    CGCCGCTCTC GTAATTAATG TTGTAGCTGC TATTTCGAGT GGTGACGTTC
    CACTTACCGC TGTGCAGCTT CTCTGGGTTA ATCTGATAAT GGACACTCTT
    GGAGCATTGG CTTTGGCTAC TGAACCACCC ACTGATCACC TCATGGGGAG
    GCCTCCAGTT GGCAGAAAAG AACCTCTTAT TACCAACATC ATGTGGAGAA
    ACTTGCTGAT CCAGGCTATT TATCAAGTGA GTGTATTGTT AACACTCAAT
    TTCCGAGGCA TAAGCATACT TGGCCTGGAG CATGAAGTGC ATGAACACGC
    CACTAGAGTG AAGAACACAA TAATCTTCAA CGCCTTTGTT CTCTGCCAAG
    CTTTCAATGA GTTCAATGCT CGTAAACCAG ATGAGAAGAA CATCTTCAAA
    GGTGTGATCA AGAATCGTCT CTTTATGGGA ATAATAGTCA TAACTCTTGT
    GCTCCAGGTT ATCATTGTTG AGTTCCTTGG TAAATTCGCT TCCACGACGA
    AACTAAACTG GAAGCAATGG CTTATCTGTG TTGGCATCGG TGTTATCAGT
    TGGCCTCTTG CTTTGGTCGG GAAATTCATT CCGGTGCCTG CAGCTCCTAT
    AAGCAACAAA TTGAAAGTAC TAAAATTCTG GGGCAAGAAG AAAAATTCTT
    CTGGAGAAGG TTCACTCTGA TTTGGAGGCC AGTTTATTAT CTCTCAGACA
    CTGATGAGAT TGTTTGATAC TCTTTTAGGA CTAACAGAAA AAAAAACGTT
    TGGTTTGGTA TGATGGATTT ATTGATATTT TTCGGAAACC CAACCCCCCA
    AGTACAGTTT TTCGGGGTTT GTTGGTCGAG CAACTTTGGA TTACTGGTTT
    TCTTTTTGGT CTTTTTTTTT GTAATATGAT CGACTACCTT TCGAATCATT
    ACTGGTAAAG ATTTTAACCA AAAAA

    Gene models with high sequence identity

    1. AT5G57110.2 [+] show detail - autoinhibited Ca2+ -ATPase, isoform 8
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr ATPase, P-type, calcium-transporting, PMCA-type 0
    HMMTigr ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 1.6e-16
    HMMTigr ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2e-23
    HMMTigr ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 7.2e-34
    HMMPfam ATPase, P-type, ATPase-associated domain 2.3e-62
    HMMPfam ATPase, P-type cation-transporter, C-terminal 2.1e-47
    HMMPfam Haloacid dehalogenase-like hydrolase 4.4e-22
    HMMPfam CaATP_NAI 4.6e-19
    HMMPfam ATPase, P-type cation-transporter, N-terminal 7.2e-13
    HMMSmart ATPase, P-type cation-transporter, N-terminal 7e-06
    PatternScan ATPase, P-type phosphorylation site 0
    Gene3D no description 7.7e-24
    Gene3D no description 1.8e-39
    Gene3D no description 2.4e-87
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
    FPrintScan ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 2.4e-35
    FPrintScan ATPase, P-type, H+ transporting proton pump 2.1e-11
    FPrintScan ATPase, P-type, H+ transporting proton pump 2.1e-11
    FPrintScan ATPase, P-type, H+ transporting proton pump 2.1e-11
    superfamily Calcium ATPase, transmembrane domain M 3.9e-121
    superfamily HAD-like 8.3e-49
    superfamily Calcium ATPase, transduction domain A 9.1e-26
    HMMPanther CATION-TRANSPORTING ATPASE PLANT 0
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 0

    See the detailed result >

    AT5G57110.2

    Model type
    Protein coding
    Short Description
    autoinhibited Ca2+ -ATPase, isoform 8
    Curator Summary
    Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.
    Computational Description
    "autoinhibited Ca2+ -ATPase, isoform 8" (ACA8); FUNCTIONS IN: protein self-association, calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: autoinhibited Ca(2+)-ATPase 10 (TAIR:AT4G29900.1); Has 45517 Blast hits to 34552 proteins in 3221 species: Archae - 872; Bacteria - 31142; Metazoa - 4022; Fungi - 2709; Plants - 2112; Viruses - 3; Other Eukaryotes - 4657 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR