F17427

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17427

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17427

Determination of introduced cDNA(s)

  • RAFL09-67-C10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-C10 - Resource: pda09891

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-C10 - full reading 
    GGAGATCACA AAGCAATCTA AAAACATTTC TCTTGATCTT TTTCCTTTAC 
    CAAAAAACAA AGATCCTTTC TTCTGTTTCG TAATGATGGC TAGAAACGTT 
    CTAGTAAGCG GTGGTGCTGG ATACATCGGT AGTCACACGG TGCTTCAACT 
    TCTTCTCGGT GGTTACTCCG TCGTAGTTGT TGATAATCTC GATAATTCCT 
    CCGCCGTCTC TCTTCAACGT GTGAAGAAAC TCGCGGCTGA ACACGGAGAA 
    CGCCTCTCCT TCCACCAGGT GGATCTTCGA GACAGGTCTG CTCTTGAGAA 
    GATATTCTCA GAAACAAAGT TTGATGCAGT GATACATTTT GCTGGACTTA 
    AAGCAGTTGG TGAGAGTGTA GAGAAGCCTT TGCTTTATTA TAATAATAAT 
    CTTGTTGGTA CTATTACTCT TTTGGAAGTT ATGGCTCAAC ATGGCTGCAA 
    AAATCTTGTG TTTTCATCAT CAGCAACTGT GTATGGCTCT CCAAAAGAAG 
    TTCCTTGTAC AGAGGAGTTT CCAATTTCTG CTTTGAACCC ATATGGACGA 
    ACAAAGCTAT TCATTGAGGA AATCTGCCGC GATGTATACG GTTCTGACCC 
    GGAATGGAAG ATTATATTGC TTAGGTATTT CAATCCTGTT GGTGCACATC 
    CTAGTGGTGA CATTGGTGAA GACCCTCGTG GTATTCCAAA CAATCTCATG 
    CCCTTTGTAC AACAAGTGGC TGTTGGTAGG AGACCTCATC TCACTGTCTT 
    TGGAAATGAT TACAATACAA AAGATGGAAC AGGGGTTCGA GATTACATTC 
    ATGTTATTGA TTTAGCTGAT GGACACATAG CGGCTCTACG TAAGCTAGAA 
    GATTGCAAGA TCGGTTGTGA AGTGTACAAT CTCGGAACAG GAAATGGAAC 
    ATCAGTTCTT GAAATGGTTG ATGCTTTTGA AAAAGCATCC GGAAAGAAAA 
    TCCCTCTGGT GATCGCGGGA CGTCGACCGG GAGATGCTGA AGTTGTATAC 
    GCCTCGACGG AAAGAGCAGA AAGTGAATTG AATTGGAAGG CCAAATATGG 
    GATTGAGGAG ATGTGTAGAG ATTTGTGGAA CTGGGCTAGT AATAATCCTT 
    ATGGATATGA TTCCTCTTCT GAAGACAACT CTCATTAACT TTTCTTAATC 
    GTTTTCTTCT TTTGCTAAAA CATATTTCTC CACACTAAAT TATTATAGTA 
    TCCGCAAGAA AAAACAACAA CAATAAAGAG TCAGATTTTA GGGAAATATA 
    GGGACATTAT GTATTATTAT TACAATCAAT ACTTAGTCTG TAATTGATTT 
    GGATATGTTC TTGTATAATC AAAAAAGATT TGTTATGAAT AGCTACAACG 
    CAAATGTTTA GCTCTATACG GCAAAAAGTA CCTTGAGGTT GACACGACGT 
    CGTTTTCAGC TCGGTGATAG TTGAAATGTA TCTTTCTGAA GCTTTTAAGT 
    TCAAGAGCCC ACACACTTCT TCTCATTCTT TATAAACATA ACACTGGACA 
    GTAACCAAAC TTCAGATCTG AATCAACCTC TTAAGTGGTA CAGAAGAAGA 
    GAAAGGAATG ATGATTAGTG AAAGAGATGA TTTTAGTCTC ACTGGACCAT 
    TACACTTAAC ATCTATAGAT TGGGCTAATG AACATCATCG ACGATCCGTA 
    GCTGGATCTT TGGTTCAAGG AATCTATGTA GCTGAGCGTG ACCGTCAGCT 
    ACAAAGAGAA GGTCCTGAGT TAGCTTTATC TCCAATATGG TCTGAGTTTT 
    TCCATTTCCG CCTCATTCGT AAGTTTGTCG ATGACGCGGA TAACTCTATC 
    TTCGGAGGAA TCTATGAGTA CAAACTGCCG CAACAGCTCT CTCAAACCGT 
    CAAATCAATG GAATTTAGTC CACGTTTTGT GATTGCTTTC AGAGGAACGG 
    TTACAAAAGT GGACTCCATT TCCCGTGACA TCGAGCATGA CATCCATGTT 
    ATTAGAAACG GGCTTCACAC GACAACACGG TTTGAGATAG CTATCCAAGC 
    AGTGAGAAAC ATTGTTGCTT CGGTTGGTGG TTCTAGTGTT TGGCTTGCTG 
    GTCATTCTCT TGGTGCATCT ATGGCATTAC TTACCGGGAA AACCATCGCT 
    AGAACCGGGT TTTTTCCTGA GTGTTTCGCA TTCAATCCGC CGTTTTTGTC 
    TGCCCCTATC GAAAAAATTA AGGATAAGAG GATTAAACAT GGGATACGCA 
    TTGCAGGCAG TGTGATCACA GCTGGACTTG CTCTAGCCAA AAAAGCCACC 
    CAACACTACA GCCAAAACGA CCGTGCATTA CCCGCACCTC CTGATCCATT 
    TGAAGCTTTA TCCGACTGGT TCCCGCGGCT GTATGTCAAC CCTGGTGACC 
    ACTTATGCTC AGAGTATGTT GGTTACTTTG AGCACCGAAA CAAGATGGAA 
    GAAATCGGGA TTGGGTTTGT AGAGCGGGTA GCGACGCAGC ACTCGTTGGG 
    CGGTATGCTG TTAGGAGGAC AAGAGCCGGT ACATCTGATT CCATCTTCGG 
    TTTTGACGGT GAACTTAAGC TCCTCGAGAG ATTTCAAACA AGCTCATGGG 
    ATTCATCAGT GGTGGAGGGA AGATAACAAG TTTGAGACTA AAGTTTACCA 
    GTACAAATGA TTTGTATCAG TTTTTTTTTA AATGGATTTA ACCGGTATTA 
    GGCTTTTACT TTCCGGTTTA GACGGTTCAA TGTATCGCAA TCATAAATAA 
    GTGTCTCTCT ATAGTCGGTA TATATAAACC GGAAATAGGC GTCTACGTTC 
    TAATTTAGCC GGTTCAATGT GTTGTAATCT TATATATAGT CTCTTGATCA

    Gene models with high sequence identity

    1. AT4G10960.1 [+] show detail - UDP-D-glucose/UDP-D-galactose 4-epimerase 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 4.6e-26
    superfamily NAD(P)-binding domain 5.2e-110
    HMMTigr UDP-glucose 4-epimerase 3e-185
    HMMPanther UDP-glucose 4-epimerase 2.4e-201
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 2.4e-201
    FPrintScan Nucleotide sugar epimerase 2.8e-05
    FPrintScan Nucleotide sugar epimerase 2.8e-05
    FPrintScan Nucleotide sugar epimerase 2.8e-05
    FPrintScan Nucleotide sugar epimerase 2.8e-05
    HMMPfam Lipase, class 3 1.3e-06
    HMMPfam NAD-dependent epimerase/dehydratase 1.7e-55
    Gene3D no description 1.5e-07
    Gene3D NAD(P)-binding domain 6.2e-66

    See the detailed result >

    AT4G10960.1

    Model type
    Protein coding
    Short Description
    UDP-D-glucose/UDP-D-galactose 4-epimerase 5
    Curator Summary
    Encodes a protein with UDP-D-glucose 4-epimerase activity.
    Computational Description
    UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (UGE5); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: response to stress; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, root, guard cell, leaf, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (TAIR:AT4G23920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR