F17446

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17446

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17446

Determination of introduced cDNA(s)

RAFL07-18-J24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-18-J24 - Resource: pda01466

full reading [+] show sequence

ATCCTTTCTC TTTGTTCTAA GTACAAGCAA CAATGGAGTG GCCATGGTCG 
GCCATCGCTG CTTCTTCTTC CTCTTCTTCT AGTTGCTTCT TTGCTTCTCC 
TAACTCTTGC TTGTCTATTA CTAGACGAAC GAATTTGAGC TGTGTTAACA 
CTTCGGTTAA ATCCTTGCGC CACAGCAGAT TCGACTCGAA GCATAATCTC 
GTTAAACGTC GAATCAATGG AGATTCCGTT GTTCGGAGAA GCACCACAAG 
CAATAATAGC ACTGAGGAGA CAGAATCATC GTCGTCTTCT TCGTCTGTAG 
ATTGCGTTGG AATGGGATCA GACGTGGAAT GCGTCAATAA CGGGGAAGAT 
GAGGAGAATC GGAGCTCTGG AATCTTGAGC GGCGGTGAAG GAACGTTTCT 
TGAATGGACG GTTCTGATTT CACCCTTCTT TTTCTGGGGA ACGGCGATGG 
TGGCGATGAA GGAAGTGTTG CCCATTACTG GTCCTTTCTT CGTGGCCGCG 
TTTCGGTTAA TTCCGGCTGG TTTGTTGCTT GTCGCCTTTG CAGTTTACAA 
AGGCAGACCT TTGCCTGAAG GAATCAATGC TTGGTTCTCT ATCGCTCTCT 
TTGCTCTTGT GGACGCCACT TGTTTCCAGG GATTTCTTGC TCAAGGGTTA 
CAGAGAACTT CTGCTGGTTT AGGAAGTGTC ATAATTGATT CTCAGCCACT 
GACTGTAGCT GTGTTAGCAT CTTTCTTGTT TGGTGAGTCA ATTGGAATAG 
TGAGAGCTGG AGGTTTGCTT CTTGGTGTTG CTGGACTTTT GCTTCTTGAG 
GTTCCATCAG TAACTTCAGA TGGTAATAAT TTTTCCTTGT GGGGAAGTGG 
AGAATGGTGG ATGCTTCTTG CAGCTCAGAG CATGGCTATT GGCACTGTCA 
TGGTTCGATG GGTCTCAAAA TACTCAGATC CAATTATGGC AACCGGTTGG 
CATATGGTTA TCGGTGGCCT TCCTCTTTTG GCGATTTCTG TTATAAATCA 
TGACCCGGTT TTTAATGGTA GTCTTCAAGA TCTATCCACA AATGATGTTA 
TAGCACTTCT CTACACATCC ATTTTTGGCA GCGCAGTTAG CTACGGTGTT 
TACTTCTATA GCGCTACTAA AGGAAGCCTA ACTAAACTCA GCTCACTCAC 
CTTCTTGACA CCAATGTTTG CATCAATCTT TGGGTATCTG TACCTCAATG 
AGACTTTCTC CTCATTGCAA CTGGTCGGAG CAGCAGTGAC TTTGGTCGCT 
ATATACTTGG TGAACTTTCC CGAAGGCAAC GACTGAGACA CTCTTTGAGT 
TCTTACTTAC ACTCTTTGAG TTCTTACGTC ATTTTTAAAC TTGTTATGAA 
GGTGGAAATG TATCATAGTT TCATTATCTT CAATCTTATT GTATATAATA 
AAATGAAGCA TCATAGTTCA GTG

Gene models with high sequence identity

AT3G02690.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
superfamily	Multidrug resistance efflux transporter EmrE	1.8e-13
superfamily	Multidrug resistance efflux transporter EmrE	2.1e-13
HMMPfam	Protein of unknown function DUF6, transmembrane	2e-18
HMMPfam	Protein of unknown function DUF6, transmembrane	6.4e-24

See the detailed result >

AT3G02690.1

Model type: Protein coding
Short Description: nodulin MtN21 /EamA-like transporter family protein
Computational Description: nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); Has 18949 Blast hits to 18894 proteins in 2006 species: Archae - 336; Bacteria - 13590; Metazoa - 17; Fungi - 4; Plants - 207; Viruses - 0; Other Eukaryotes - 4795 (source: NCBI BLink).
Link: InterPro Scan - TAIR