F17605

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17605

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17605

Determination of introduced cDNA(s)

  • RAFL09-36-H22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-36-H22 - Resource: pda06141

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-36-H22 - full reading 
    ATCGAGAAAC CTCGAAATCA AAAAGCACGT CGGTGACTTG TACTCTTCAA 
    TCTCTTCTTC CTCTCTTTCA CATCTCCTTC TCTCGAACCC ATCGACCTGC 
    GCTAATTCAT CATCGACCTT GCTCAAATTC ATCAACCATG TCTTACGATT 
    ATCTCTTCAA GTACATAATC ATCGGAGACA CAGGTGTGGG AAAATCGTGT 
    CTGCTTCTGC AATTTACTGA TAAGAGGTTC CAACCAGTCC ACGATCTCAC 
    CATTGGGGTT GAGTTCGGTG CTCGGATGGT CACCGTCGAT GGACGCCCCA 
    TCAAACTCCA AATTTGGGAC ACCGCTGGAC AAGAATCTTT TAGATCCATC 
    ACCAGATCAT ACTACAGAGG AGCAGCCGGA GCTTTACTGG TTTATGACAT 
    CACCAGGAGA GAGACGTTTA ACCATCTGGC AAGCTGGTTG GAGGATGCTC 
    GGCAACATGC AAATCCTAAC ATGAGTATTA TGCTGATTGG GAACAAATGT 
    GATCTTGCTC ACAAGAGAGC TGTTAGCAAA GAGGAAGGTC AACAGTTTGC 
    CAAAGAACAT GGCCTGCTAT TCTTAGAAGC ATCTGCAAGA ACTGCTCAAA 
    ACGTTGAGGA GGCCTTCATA GAGACTGCTG CCAAGATCCT CCAGAACATT 
    CAGGATGGTG TCTTTGATGT ATCCAACGAG TCATCAGGTA TCAAGATTGG 
    TTACGGGCGT ACTCAAGGTG CAGCTGGAGG AAGAGATGGT ACGATCTCTC 
    AGGGAGGTGG CTGTTGTGGT TAAAAAATCC TCGAGAGAGG TGTCACATAT 
    CTGCTGTAAT CTGGTGATTC AGAAACTACT ATTGCTTCTA TTTACCTCTG 
    CAAATGGATA CACCAGAATG TATAGTTTCT CTTTCTTTCT TTCTTTTTTT 
    CTCTTTTTCC CAGATTGTCT TTTATCAAAA AACCAAACGG GTGCATTTAA 
    GAGTGAACAG GCTGATCTTT ATAAACCAAA CAGGCGTTGG CTTATTTAAA 
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT4G35860.1 [+] show detail - GTP-binding 2
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ras small GTPase, Ras type 1.4e-36
    HMMSmart Ras small GTPase, Rab type 2.4e-109
    HMMSmart Small GTPase, Rho type 5.5e-12
    HMMSmart Ran GTPase 1.4e-05
    HMMPanther RAS-RELATED PROTEIN RAB-2 3.1e-90
    HMMPanther RAS-RELATED GTPASE 3.1e-90
    ProfileScan Small GTPase 36.707
    HMMTigr Small GTP-binding protein 1.3e-30
    Gene3D no description 2.4e-66
    FPrintScan Ras GTPase 2.5e-42
    FPrintScan Ras GTPase 2.5e-42
    FPrintScan Ras GTPase 2.5e-42
    FPrintScan Ras GTPase 2.5e-42
    FPrintScan Ras GTPase 2.5e-42
    superfamily P-loop containing nucleoside triphosphate hyd 3.9e-62
    HMMPfam Ras 2.8e-62

    See the detailed result >

    AT4G35860.1

    Model type
    Protein coding
    Short Description
    GTP-binding 2
    Curator Summary
    GTP-binding protein ATGB2
    Computational Description
    GTP-binding 2 (GB2); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog B1C (TAIR:AT4G17170.1); Has 26616 Blast hits to 26543 proteins in 733 species: Archae - 16; Bacteria - 127; Metazoa - 14148; Fungi - 3650; Plants - 2938; Viruses - 20; Other Eukaryotes - 5717 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR