F17615

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17615

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F17615

Determination of introduced cDNA(s)

  • RAFL08-16-P13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-16-P13 - Resource: pda04928

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-16-P13 - full reading 
    TGGATCTCGT CTTCGCAATC ATCAACCATC AATGGAAGTT GAAGAAGAAG 
    TTAAACAAAT CATAGATGAG GTCAAAGAGC TTCATGACTC CGCCGCTTCT 
    TTCATCTCAT CTTCTTCTCA ACAAGAGCTC TCTCTCCGTC AAAAAGCCTC 
    CGCCGTTGAT TCCTCTATCC GTCGTCTCCA CTCTACTATC GTCTCCAACA 
    AAAATCTCGA TCCTAAGCTC GTCGAAAAGC TTGAGGAAGA TCTGCATCGT 
    GCTAGATGCA TGCTTGTTGA CGGAGAAACA TCTTCATTTC TCCCATCCAA 
    ACCACAAGGA CGCTTTGTGA GAATGTTTTG TGGACCTGTG AATGTTCGAG 
    CTTTGCGTAA AGATGTTCAG CTTAAAGTTA AAGAAGAATA CAATCGTTAC 
    AGAGACAAGA CTGCTCTTCT TTTTCTTTTT TTCCCTGCCA CACTTTTAAT 
    CCTTAGGTCT TATTATTGGG GTGGATGTTT GCCTGCGTTT CCTGTCCAGC 
    TCTATGAGGC TTGGCTGTTG TTTCTCTATG CTGGGTTGGC TATGCGTGAG 
    AATATATTAA GAGCTAACGG AAGCGATATT CGTCCATGGT GGCTATATCA 
    TCATTATTGT GCCATGGCTA TGGCCCTTGT CAGCCTCACA TGGGAAATCA 
    AAGGTCAACC AAACTGTGTC CAGAAACAGA GAGGAGTCCA TCTTTTCCTA 
    CAATGGGCTA TGATGCAAGG TGTCGCCATG CTTTTACAAA ACAGATATCA 
    ACGCCAAAGA TTATACACTC GCATTGCACT AGGAAAGGCT AAGAGAATGG 
    ATGTTGTTTG GGGAGAAACG GCTGGAGTTG ATGGACAACT ATGGCTGTTA 
    TGTCCTATAC TGTTCATTTT ACAGGTGTTT GAAGCATACG TTGGACTGCT 
    GTTGCTAAGA AAAACAGTAA CTGGAGTTGT TAATGAATGG CAGGTGATGG 
    TTTGTGGGAT TCTTCTGGTA GTGATGGCAG TTGGGAACTT CATAAATACA 
    GTAGAGACAC TGATGGCAAA GTCAAGAGTT AAGGCAAAGA TGAAGAGAAG 
    TAAAAGCAGA GCAGAGCTTA ATTAGACTTC ACAGGTCTCT CATCTGTTCA 
    AAATCTTGCT TTTTTTGCAG TTCATAAATT TTTGTCCTTT TTGTTTTTAG 
    GCCACGGATA AAATAAAACT GTGACCATCC TTTTTCTGTG TAAATGGAAG 
    TGGCAGTTGA TATTTGATAA T

    Gene models with high sequence identity

    1. AT4G10430.1 [+] show detail - TMPIT-like protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TMPIT-like 9.4e-175
    HMMPfam TMPIT-like 7.2e-123
    Coil coiled-coil 0

    See the detailed result >

    AT4G10430.1

    Model type
    Protein coding
    Short Description
    TMPIT-like protein
    Computational Description
    TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR