F17651

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17651

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17651

Determination of introduced cDNA(s)

  • RAFL02-10-D09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-10-D09 - Resource: pda00166

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-10-D09 - full reading 
    AGACCTCGGC CTCCATTGCC CTATGCAGTG ATACCTAACA TGCCTGGACG 
    CTTAAGACCT GCTTCCCCGT ACATTGGAAA TGTGCAGGGT CCTCGAGGTT 
    CACTTATTGG AAATTATCCG TATCAGCAAC CACTTCCATA TAACTACCAG 
    CAAGGAGTTG TCTATCCTTA TGGAGTAACC GCTTATGGAC CCGAGTACAT 
    GTACTCGCAA TCACAGGGTT TATATAGTCC ATACATGGGT CAGCAATACC 
    TTCAGGTCTA TGGAGTACCT GGAGCAGTGA ATTCACCCGT TTATCAATAC 
    GGGCAACTAA GTCAGACTAT TCCTAATGGC CATGGTTATA CAGCAGTTCA 
    AGGCTATTCG GTTCCAGGAA GCCATATTCT GCAGCTTGGT GGACCCACTG 
    TCAGTACGAT GACCACTTCA TCTATGCCTG CTCTTCAAGC TCCTTACCCT 
    TCAGGTATAC CAGGCCCTGC TCCCGTACAG TCGCATATCA TTGTCCACTC 
    CCCTCAATTT ATGCAGAGTA CCGCTTCTGA CCAAACAACA AGTTATTCTT 
    GAAGACTGAA GAGAAAAGGA AGTTAAGTTA GTGAAACTGC TACTGGAGGT 
    GTTGCAGAAG AGGCTTCCTG TTTTATTAAG TCTTGCACGT TATTTATCTT 
    GCATCCTTAA GGTTATGTAA AATAGTCTTG CTCACTGGGA AGGCGCAGCG 
    CAGAAGGAAA AAAAAAAGCA AAGGAAATTG GAGTGTCAGG GTTTATGCTT 
    CCGTTTTCTT ACCCATCCAT CAATGTGTAT AAAACACAGC CACAAAAAAG 
    CTGCTGGCTC GAGCTTGGGT TGAGTTTGAA GGCACCATAG CTGGTTTCCC 
    TTGGAGGGGA AGACCAGTAG TAATAAGTTG GTGTACAATA TGCATATATT 
    TATACACACA TACACAAGCA TATACATATG GTAGAATCAA AATCTGATTC 
    TTTTCAAGTC TGAAGTCGTA ATACCACTAC ACTTCCTTCA GGTGCAGGAG 
    TGTAGTGAGT AACATTGATA GGTATATAGC CTTTGTCTTT AAGTCCTGCA 
    TTGTAAGTAA AACATGTTCA TCATGTCCTT TTCTGTGATT GTGCATATTT 
    AGGGTTCTCT CTTCTTCCAT CTGAACACAC TGGGATTGTT TACTGAAGCT 
    TACTTCAAAG TATGGAGTAG GCTCTTTTCT C

    Gene models with high sequence identity

    1. AT1G76460.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RNA-BINDING PROTEIN-RELATED 9e-43
    HMMPanther RNA-BINDING PROTEIN 9e-43

    See the detailed result >

    AT1G76460.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G20880.2); Has 4261 Blast hits to 4252 proteins in 371 species: Archae - 0; Bacteria - 0; Metazoa - 1989; Fungi - 541; Plants - 1112; Viruses - 30; Other Eukaryotes - 589 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR