F17825

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17825

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17825

Determination of introduced cDNA(s)

  • RAFL05-13-B03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-B03 - Resource: pda09328

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-B03 - full reading 
    AAAAAAAAAA AAGCATTTAC ACAACGAAGA TCATTAATGG CTCTCGAGGC 
    ATGGTTTATG GATGATAGCA ATGAGGACCA GAGACTTCCT CATCATCGTA 
    ACCCGAAAGA ACTCGTCTCG TTGGATTACT TGGCAGAGTT GGGAGTGTTG 
    TACTGGAAGT TGAACCCTGA GAACTACGAG AATGATTCTG AACTTAGCAA 
    GATTAGAGAA GACAGGGGTT ACGATTACAT GGATTTGCTG GATCTGTGTC 
    CCGAGAAAGT CAGCAACTAC GAAGAAAAGC TGAAGAACTT TTTCACAGAA 
    CACATTCACA AGGACGAAGA GATTCGGTAC TGCCTAGCAG GAAGTGGCTA 
    CTTTGATGTT AGGGACAAGG ATGATCGTTG GATCCGTATC TGGATGCAAC 
    CTGGCGATCT CATTGTCCTT CCTGCCGGAA TCTACCACCG GTTCACACTC 
    GACGCCAGCA ACTACATCAA GCTAATGAGG CTGTTCGTGG GGGAACCGGT 
    TTGGACACCA TATAACCGGC CACAGGAAGA ACATCCTGTT AGGAAAAAGT 
    ATATCCACGG CTTAACCTAC AAGTTTGGAG AAACCGTTAA AGCACATTAA 
    CAATATTAAT ATATGCTTGT TGTGTAATTT GTATGTATTG TTTACTCTTT 
    AGTCTTAAGC AGTAAAATAA AAACAGCGGC TCCTTCTGGA TAGTTGTTCT 
    TGTAACATAC TTTTGCGATG TATGCTTTTA TACATAAAAA AAATAGTGTG 
    TATTTATC

    Gene models with high sequence identity

    1. AT5G43850.1 [+] show detail - RmlC-like cupins superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Acireductone dioxygenase, ARD 5.6e-63
    Gene3D RmlC-like jelly roll fold 4.1e-73
    superfamily Cupin, RmlC-type 5.9e-47
    HMMPanther Acireductone dioxygenase, ARD 4.4e-91

    See the detailed result >

    AT5G43850.1

    Model type
    Protein coding
    Short Description
    RmlC-like cupins superfamily protein
    Computational Description
    ARD4; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: L-methionine salvage from methylthioadenosine, oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acireductone dioxygenase, ARD (InterPro:IPR004313), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G14710.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR