F17827

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17827

Determination of introduced cDNA(s)

RAFL04-16-B13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-B13 - Resource: pda02316

full reading [+] show sequence

CTCTCACCCA CCTTATAGAA TTTTCTCGCC CTATTTTTCT CTCAACACCA 
AAAATTTGTA TTTTTTTTTA CTATTGTTTA CCCCAAAAAG TATTGAGAAT 
CGCAAAAAAA CTGAATTGTA AAAAATATTT GAGAAAGAGA AATACAAAAA 
AAAACAAAAA AAAAGTTTTA AAGAAAAGGC GAAGGAGAGA TCGTGAGAGA 
CAGAGAGGCT GCCGAAGAAA GGAGAATTTA GGGTTTGGAG ACTTTTGTTG 
AAATTTGGCG TTACGTTTTT TTTGTATTTC CTCAACAAAT TTCTCATCTG 
CTCTCTTCAT ATTGTGTCTT TGAACGCTTC ATCTCCTCGT CATGGTGGCC 
ACCTCTGCTA CGTCGTCATT CTTTCCTGTA CCATCTTCTT CACTTGATCC 
TAATGGAAAA GGCAATAAGA TTGGGTCTAC GAATCTTGCT GGACTCAATT 
CTGCACCTAA CTCTGGTAGG ATGAAGGTTA AACCAAACGC TCAGGCTCCA 
CCTAAGATTA ATGGGAAAAA GGTTGGTTTG CCTGGTTCTG TAGATATTGT 
AAGGACTGAT ACCGAGACCT CATCACACCC TGCGCCGAGA ACTTTCATCA 
ACCAGTTACC TGACTGGAGC ATGCTTCTTG CTGCTATAAC TACGATTTTC 
TTAGCGGCTG AGAAACAGTG GATGATGCTT GATTGGAAAC CTAGGCGTTC 
TGACATGCTG GTGGATCCTT TTGGTATAGG GAGAATTGTT CAGGATGGCC 
TTGTGTTCCG TCAGAATTTT TCTATTAGGT CATATGAAAT AGGTGCTGAT 
CGCTCTGCAT CTATAGAAAC CGTCATGAAT CATCTGCAGG AAACGGCGCT 
TAATCATGTT AAGACTGCTG GATTGCTTGG AGATGGGTTT GGCTCTACAC 
CTGAGATGTT TAAGAAGAAC TTGATATGGG TTGTCACTCG TATGCAGGTT 
GTGGTTGATA AATATCCTAC TTGGGGAGAT GTTGTTGAAG TAGACACCTG 
GGTCAGTCAG TCTGGAAAGA ATGGTATGCG TCGTGATTGG CTAGTTCGGG 
ACTGTAATAC TGGAGAAACC TTAACACGAG CATCAAGTGT GTGGGTGATG 
ATGAATAAAC TGACAAGGAG ATTGTCAAAG ATTCCTGAAG AGGTTCGAGG 
GGAAATAGAG CCTTATTTTG TGAATTCTGA TCCTGTCCTT GCCGAGGACA 
GCAGAAAGTT AACAAAAATT GATGACAAGA CTGCTGACTA TGTTCGATCT 
GGTCTCACTC CTCGATGGAG TGACCTAGAT GTTAACCAGC ATGTGAATAA 
TGTAAAGTAC ATTGGGTGGA TCCTGGAGAG TGCTCCAGTG GGAATAATGG 
AGAGGCAGAA GCTGAAAAGC ATGACTCTGG AGTATCGGAG GGAATGCGGG 
AGAGACAGTG TGCTTCAGTC CCTCACTGCA GTTACGGGTT GCGATATCGG 
TAACCTGGCA ACAGCGGGGG ATGTGGAATG TCAGCATTTG CTCCGACTCC 
AGGATGGAGC GGAAGTGGTG AGAGGAAGAA CAGAGTGGAG TAGTAAAACA 
CCAACAACAA CTTGGGGAAC TGCACCGTAA GAAAAAGAAA ACACAACAAC 
AATGGCTCAT TTGAATCCCC TTGTAACTAT ATCTGCTACT ACCACCTTGC 
TTGCTTGCAA CCACCACCAC CACCACCACC ATTTCATGTC CTCCTCCTCA 
CAAAAGTTTC GGCCACCAAC CCTTTGTATA TTTCTTTTTT TGGTTCTTCT 
TCTTTTTTTA TTCGATGGAG ATTTATTATA TTTATTTAAT CTTTCTATTT 
ATTTTTTTGC TTAATGGGAA ATGGGTGTCG TGTATCATTA CGAATTCTGA 
TGTTATGTAA CCCATGTGCC AGCGGAAGAC AAAGGCATCA ACTCTCTCTT 
ATCCTAAATT TATTGTACTT TGTTT

Gene models with high sequence identity

AT1G08510.1 [+] show detail - fatty acyl-ACP thioesterases B
E-value: 0; Score: 99.95

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.6e-06
HMMPfam	Acyl-ACP thioesterase	8.5e-103
HMMPfam	Acyl-ATP thioesterase, N-terminal domain	4.7e-52
superfamily	Thioesterase/thiol ester dehydrase-isomerase	1.6e-23
superfamily	Thioesterase/thiol ester dehydrase-isomerase	1.8e-12

See the detailed result >

AT1G08510.1

Model type: Protein coding
Short Description: fatty acyl-ACP thioesterases B
Curator Summary: Encodes an acyl-acyl carrier protein thioesterase. Hydrolyzes primarily saturated acyl-ACPs with chain lengths that vary between 8 and 18 carbons. Involved in saturated fatty acid synthesis. Nuclear-encoded, plastid-targeted globular protein that is functional as dimer.
Computational Description: fatty acyl-ACP thioesterases B (FATB); CONTAINS InterPro DOMAIN/s: Acyl-ACP-thioesterase, N-terminal domain (InterPro:IPR021113), Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: fatA acyl-ACP thioesterase (TAIR:AT3G25110.1); Has 1275 Blast hits to 1274 proteins in 533 species: Archae - 0; Bacteria - 944; Metazoa - 0; Fungi - 0; Plants - 322; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR