F18334

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18334

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F18334

Determination of introduced cDNA(s)

  • RAFL07-11-A11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-11-A11 - Resource: pda04115

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-11-A11 - full reading 
    AAAATTCACT CAACTTTCTC TCACTCCTTT TTTCTCTCTC TCTCTCTATC 
    CTCTACAGAG CTCGCAGCAA CTAGCGCAGG TACTCTCTCT TTCTCACTCC 
    TTAATCTAGA TACTAAAGCT GATCATTTTC ATATCTCTCA GTAATCCGTT 
    TCGTCTGATC GGGATGTTGG AGAAGGTTGA AACTTTCGAC ATGAACAGAG 
    TCATTGATGA ATTCGATGAA ATGACTAGAA ACGCTCATCA AGTCCAGAAA 
    CAAACTTTGA AAGAGATTCT TCTCAAGAAC CAATCCGCCA TTTACTTACA 
    AAACTGTGGT CTCAATGGAA ACGCTACTGA CCCTGAAGAA GCTTTCAAAT 
    CTATGGTTCC TTTAGTCACT GATGTTGAAT TAGAGCCTTA CATCAAAAGA 
    ATGGTTGATG GTGACACTTC ACCTATTCTC ACTGGTCACC CTGTTCCTGC 
    CATTTCCTTA AGCTCTGGAA CTAGTCAAGG CCGTCCAAAG TTTATTCCTT 
    TCACTGATGA ATTAATGGAG AACACATTGC AACTGTTTCG CACTGCTTTT 
    GCCTTCAGAA ACAGAGATTT TCCCATTGAT GACAATGGCA AAGCTTTGCA 
    ATTTATCTTC AGCAGCAAGC AGTACATATC AACGGGAGGT GTCCCGGTTG 
    GAACCGCAAC CACAAACGTG TACCGCAACC CTAACTTCAA AGCTGGGATG 
    AAATCTATAA CGTCTCCTTC CTGTAGTCCC GACGAAGTTA TCTTTAGTCC 
    TGATGTCCAT CAAGCCTTGT ATTGCCATCT CTTATCCGGA ATTCTCTTCA 
    GAGATCAAGT TCAATACGTC TTTGCCGTCT TTGCTCACGG TCTAGTTCAC 
    GCTTTTAGAA CCTTTGAACA GGTTTGGGAA GAGATTGTTA CCGATATCAA 
    AGATGGTGTC TTAAGCAACC GTATTACTGT CCCATCGGTC CGTACTGCAA 
    TGTCGAAGCT GCTCACACCT AACCCTGAGC TAGCTGAGAC GATCCGCACC 
    AAATGTATGA GTTTGAGCAA CTGGTACGGA TTGATTCCCG CGCTCTTCCC 
    CAACGCAAAG TATGTTTACG GGATCATGAC TGGCTCCATG GAGCCGTATG 
    TGCCAAAGCT GAGACATTAC GCGGGTGATC TACCTCTTGT GAGCCATGAC 
    TACGGTAGCT CGGAAGGATG GATTGCTGCT AATGTTACCC CAAGGTTATC 
    TCCAGAGGAA GCTACATTTG CTGTGATTCC GAATCTCGGT TATTTCGAGT 
    TTCTCCCTGT ATCTGAAACA GGGGAAGGAG AGGAGAAACC GGTTGGTTTA 
    ACTCAAGTCA AGATTGGAGA AGAGTATGAA GTTGTCATCA CAAATTACGC 
    AGGGTTGTAT CGATACCGGC TTGGAGATGT GGTAAAGGTC ATTGGTTTCT 
    ACAACAACAC TCCCCAACTA AAATTCATAT GCAGGAGAAA CCTGATTCTC 
    TCGATCAACA TCGACAAGAA CACCGAAAGA GACCTTCAGC TTTCAGTAGA 
    ATCGGCTGCA AAGAGACTCT CAGAAGAAAA GATCGAGGTC ATAGACTTCT 
    CTAGCTACAT CGATGTCTCG ACAGATCCAG GACATAACGC TATCTTCTGG 
    GAGATTTCAG GAGAAACAAA CGAAGACGTT CTTCAAGATT GCTGCAACTG 
    TTTAGACCGA GCATTCATCG ATGCGGGTTA CGTTAGTTCC CGGAAATGCA 
    AGACTATTGG AGCCTTGGAG CTGAGAGTTG TCGCAAAAGG AACTTTCCGG 
    AAGATTCAAG AACATTTTCT CGGGCTTGGT TCATCGGCTG GACAGTTTAA 
    GATGCCAAGA TGTGTGAAGC CAAGTAATGC TAAGGTTCTC CAAATTCTGT 
    GTGAGAATGT GGTGAGTAGC TACTTCAGCA CAGCGTTTTG ACTCACTAAA 
    ATTGTGTGAA ATCAAAGAAA GTGGTTTTTA GTTGTTTATT TCCGTCGTTG 
    TTGTCTTTAT TTGTCAATAT AGTTTTCTTT ACGTTATTTA ATTGAGCATA 
    AACTTTTTTT ATCTCAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT2G46370.1 [+] show detail - Auxin-responsive GH3 family protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam GH3 auxin-responsive promoter 1.6e-178

    See the detailed result >

    AT2G46370.1

    Model type
    Protein coding
    Short Description
    Auxin-responsive GH3 family protein
    Curator Summary
    Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.
    Computational Description
    JASMONATE RESISTANT 1 (JAR1); FUNCTIONS IN: catalytic activity, adenylyltransferase activity, ATP binding, jasmonate-amino synthetase activity; INVOLVED IN: in 13 processes; LOCATED IN: vacuole, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G03400.1); Has 1444 Blast hits to 1399 proteins in 231 species: Archae - 0; Bacteria - 474; Metazoa - 52; Fungi - 2; Plants - 663; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR