F18413

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18413

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F18413

Determination of introduced cDNA(s)

  • RAFL06-78-D02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-78-D02 - Resource: pda03718

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-78-D02 - full reading 
    GACAGCGAAC AAGATCAAAA AGCTAGCTCT CTTCTTTTCT CATCAAACTT 
    ATTTCTCTCT CGATCGCAAT ATATACGATT CCATAAATTC TCCCAAAAAC 
    AAATTAAGAG ATAGAGGAGA GATCATGAGG TCACCGGTGC AACTCCAACA 
    CGGCTCAGAC GCCACTAACG GTTTCCACAC GCTGCAGCCT CACGATCAGA 
    CCGATGGTCC GATCAAGAGA GTGTGTCTCA CGCGCGGTAT GCATGTCCCT 
    GAACACGTTG CGATGCACCA CACACACGAC GTTGGTCCGG ACCAGTGTTG 
    CTCCTCGGTG GTGCAGATGA TCCACGCGCC GCCTGAGTCC GTGTGGGCTC 
    TTGTGCGGCG TTTCGATAAT CCGAAGGTTT ACAAGAACTT CATCAGACAG 
    TGCCGTATCG TCCAAGGCGA TGGACTACAC GTCGGCGATC TCCGGGAGGT 
    CATGGTGGTC TCTGGACTCC CGGCGGTCTC GAGCACCGAG AGGCTCGAGA 
    TCTTGGACGA GGAGCGTCAC GTGATAAGCT TTAGTGTCGT TGGTGGGGAC 
    CACAGGCTCA AGAACTACCG ATCGGTGACG ACACTACACG CGTCGGACGA 
    CGAAGGTACC GTGGTGGTGG AGTCTTACAT CGTTGATGTG CCGCCGGGAA 
    ACACGGAGGA GGAAACTCTA AGCTTCGTTG ATACTATCGT CCGGTGCAAC 
    CTTCAGTCTC TGGCTCGAAG TACCAACCGG CAATAATCTC ATCTTTCTTA 
    TATAAATTGC AATTATGTAT CTAATTTTTT TTGTTGTTCT ATTTCTTTTA 
    GATGTTCGAT CTTCTTTACA AGGAAGAAAA TTTCGAGTAC CTTTTCTTTC 
    TTTTTAAATA GATATATCGG CTTAGAAAGA ATTGTAATTT AATGGGGATT 
    TCTTTGGGAG ATTTATGTTG GAAATTTCGA AGTACTGTTG GGGGATTCAC 
    AAAACTTTGG ATTTGGAGGG TGTTAGTACT GGTACATAAA ACATTTTAAG 
    GTGAATCTGT TAAATGAATT AATCCATTTG TTGTTTTGTA CATGGTATCA 
    TTCTTTGTGA CATTGTTTAA TTTCTTGTAC TCTTTTAAAT GTTACTCTTA 
    ACCGTTTTTT TCTTTTGTGG TTTGTAAATG AATATTTGAT GCATCGGTAT 
    TGTTAATGAT AGACTTATTA ATTTATTTCT TCATAGTATG TAACATT

    Gene models with high sequence identity

    1. AT5G05440.1 [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Polyketide cyclase/dehydrase 2.8e-16
    Gene3D no description 1.4e-05
    superfamily Bet v1-like 2.3e-36

    See the detailed result >

    AT5G05440.1

    Model type
    Protein coding
    Short Description
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    Curator Summary
    Encodes a member of the PYR (pyrabactin resistance )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members. PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.
    Computational Description
    PYRABACTIN RESISTANCE 1-LIKE 5 (PYL5); CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: PYR1-like 6 (TAIR:AT2G40330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR