F18515

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18515

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18515

Determination of introduced cDNA(s)

RAFL05-11-E04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-E04 - Resource: pda01230

full reading [+] show sequence

AAATTTTTCT TCTTTTGACC ACCATTGCAT GCTTACCCGA TTGGGAAACT 
CTTTGTTATC CTTATTGATC TTCTTCCAAC GGCGATTTCC CGATCCAAAT 
TTTGGGTTGA TTGAATTCAA AGTTTCCGTT TTTACAAACC AATTTCGGGA 
AAGTTTTCAT CTTTTTTTTA TGGCTGCTTA CGCGAATTAT CTCCGACTCG 
CACGACTTGG AGGAACAAGT TCAGGTGTAA ACCTGTCGAC TCTCAGATCA 
TTCGGTTATT CAAATCCAGC ATTTGACAAG ACTCAAGAGT TTCGCTCCTC 
TTCTTCATCG TTAGTATCAT ATTCTTCGTT CAGACAATTC CACGCCAGAT 
TCATATCTCA GCTTATCAAA ACCAATGGGA AACGTTTGTT TCTTGTCGAT 
ACACTAGCTT TGGTTAGGAG CTTAGAAGCA CAAGGCCTGC CTTCAAAGCA 
AGCCGAGGCA ATAACCGGTG CTATAACTGA AGTTCTTAAC GATAGCTTAG 
GAGTTGTTTC ACAGTTAGTT GTCTCCAAGG GAGAGATGCA GAAAGCTGAA 
ATGACGCAGG AATCAAACTT ATCCAAGTTC AAAAGTGAAA TTAATAGTTC 
ACTGGACCAC CATTTCTCTT TGCTGCAACA CGAGAATGAG AAACTCCGCA 
ATGACATAGA GCGAATCCGC TCTGATATAA GACACGAGAT CGATAAAGTC 
ACAGCAGGAC AACGGTTGGA CCTGAATCTT GAAAAAGGGA GGATAAGAGA 
TGAGTTACAA AATCAAAACG GAGAAACCTC TAACCTTACA AACAAACTTG 
ACCGTGAGAT TCACACTTTG AGAGCTCAGT TAGAAGCAGC CAAGTATGAG 
GTGATCAAGT ACTGTATTGG TACTCTTGTC TCCATCTCAG CCGTTGGTCT 
CGCTGTCCTC CGGATCGTCA TGTAACTCCA TCTGACGGTG CCGGTTTTAA 
AGACCAACTC ATCAATCTTC CCTGTCTTTT AATTACGGGA TGAAAATCTT 
GGTCATGTTA ATTATATATT CGTATGTTTA ATGTAATTGT ATTTCCCCTT 
TTTTATGTGA AAGAAATAAA GAATAACCAG TCTAGTAAAT TTGAACCCTT 
CATGTATATG AATATGATGA TGTTCTTT

Gene models with high sequence identity

AT3G51090.1 [+] show detail - Protein of unknown function (DUF1640)
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	DUF1640	1.2e-72
HMMPanther	Protein of unknown function DUF1640	2.2e-111
HMMPanther	UNCHARACTERIZED	2.2e-111
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT3G51090.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1640)
Computational Description: Protein of unknown function (DUF1640); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1640 (InterPro:IPR012439); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1640) (TAIR:AT2G16460.1); Has 506 Blast hits to 503 proteins in 168 species: Archae - 2; Bacteria - 7; Metazoa - 203; Fungi - 173; Plants - 82; Viruses - 2; Other Eukaryotes - 37 (source: NCBI BLink).
Link: InterPro Scan - TAIR