F18545

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18545

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F18545

Determination of introduced cDNA(s)

  • RAFL05-12-I12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-I12 - Resource: pda02544

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-I12 - full reading 
    ATCACAAACA CAAAGCAACA ACAAACACCA CAAAAGCAAA AGAAGAAACA 
    AACGCAAGAG TTCTCAAGCA AGCTCAAACA TGGCACTAAT GAAGAAGAGT 
    CTCTCTGCTG CTCTTCTCTC ATCACCACTT CTGATCATAT GTCTTATCGC 
    ATTGCTCGCT GATCCGTTTT CAGTCGGTGC TCGCCGGTTA TTGGAGGATC 
    CTAAACCGGA GATACCAAAA TTGCCTGAGC TACCTAAATT CGAAGTTCCC 
    AAGTTGCCGG AGTTCCCTAA ACCAGAGTTG CCCAAGTTAC CCGAATTTCC 
    AAAGCCTGAG TTGCCAAAGA TCCCGGAGAT TCCAAAGCCA GAGTTACCAA 
    AGGTACCGGA GATTCCAAAG CCTGAGGAAA CTAAACTGCC AGATATTCCC 
    AAGCTTGAAT TGCCCAAGTT TCCGGAAATT CCAAAACCTG AGCTCCCAAA 
    GATGCCAGAG ATTCCAAAAC CTGAGTTACC AAAGGTACCG GAGATTCAGA 
    AGCCCGAGTT ACCAAAAATG CCGGAGATTC CAAAGCCTGA ATTACCAAAG 
    TTTCCAGAGA TTCCAAAGCC TGATTTGCCA AAGTTTCCAG AGAATTCAAA 
    GTCTGAGGTG CCTAAGCTAA TGGAGACTGA AAAGCCTGAG GCTCCTAAGG 
    TGCCAGAGAT TCCAAAGCCT GAGTTGCCAA AGTTGCCAGA AGTTCCCAAG 
    CTTGAGGCTC CTAAGGTACC AGAGATCCAG AAGCCGGAGT TGCCCAAAAT 
    GCCGGAGTTA CCTAAGATGC CGGAGATTCA GAAACCTGAG TTGCCAAAGT 
    TGCCAGAAGT TCCCAAGCTT GAGGCTCCTA AGGTACCGGA GATCCAGAAG 
    CCGGAGTTGC CCAAAATGCC GGAGTTACCT AAGATGCCGG AGATTCAGAA 
    ACCCGAGTTG CCCAAGATGC CGGAGATTCA GAAGCCTGAG TTGCCGAAGG 
    TGCCAGAGGT TCCAAAGCCC GAATTGCCAA CGGTTCCAGA GGTTCCAAAG 
    TCTGAGGCTC CTAAGTTTCC AGAGATTCCA AAGCCTGAAC TGCCGAAGAT 
    TCCAGAAGTT CCAAAACCTG AACTGCCCAA GGTTCCAGAA ATTACAAAAC 
    CTGCAGTTCC AGAGATTCCA AAGCCAGAGC TACCGACGAT GCCTCAACTT 
    CCCAAGTTGC CGGAATTCCC AAAAGTTCCC GGAACTCCTT AAGCGAAGAG 
    AAGGCCCAGC TACTTTGAAG CCCATCCCAC AATCTTAAAG TACCGTTTTA 
    CCGTTATACC ATTTGTCTAT TTGCAGAGAT GCACTTATGT CTGTCTACAT 
    CATTGTTTCC TTAGTAAAAA CCATGTCGTA TGGTTGGTCT CATAGTCATA 
    GTTCTTGTTT TTTTTGGGTA AAGACTATAC ACTTATACTT GTATAATTGT 
    ATCCTGTTAT ATTTTGTATT GTTTGTTTCC ATACAGATTT CGTTGTATTT 
    GATATACTTT TTAATTGATT ATGTTACTTA TTTAA

    Gene models with high sequence identity

    1. AT5G09530.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 2.6e-10
    FPrintScan PRICHEXTENSN 2.6e-10
    FPrintScan PRICHEXTENSN 2.6e-10
    FPrintScan PRICHEXTENSN 2.6e-10
    FPrintScan PRICHEXTENSN 2.6e-10
    FPrintScan PRICHEXTENSN 2.6e-10

    See the detailed result >

    AT5G09530.1

    Model type
    Protein coding
    Short Description
    hydroxyproline-rich glycoprotein family protein
    Computational Description
    hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G09520.1); Has 56710 Blast hits to 18930 proteins in 1860 species: Archae - 251; Bacteria - 17598; Metazoa - 17723; Fungi - 4561; Plants - 6151; Viruses - 953; Other Eukaryotes - 9473 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR