F18839

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18839

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18839

Determination of introduced cDNA(s)

  • RAFL04-16-A18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-A18 - Resource: pda07173

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-A18 - full reading 
    ATTTCGCGAA CTTTCTCCTT AGAATCGGAA CGGACGAAGA AGGAAGACAA 
    GGAAGAAGAT CGGAGATGGC ATCGAATGCG GCGGTTCCGT TCTGGAGAGC 
    GGCGGGGATG ACATATATAT CGTATTCAAA CATCTGTGCG AATATCGTGA 
    GGAACTGTCT CAAGGAGCCA CACAAAGCTG AAGCTCTTAC TCGCGAGAAG 
    GTTCACTTCT CTCTCTCCAA ATGGGCTGAT GGAAAGCCCC AGAAACCTGT 
    TTTGCGGTCA GACACACCTG AAGTTTGAAG TCAACTTTGA GCTTATGTTC 
    TTAAGGGATT CAAAAGTAAC TGAGTTACCA AGATTTGTTT TCTTTTTATT 
    GTCAACAATG GAGCTTGAGT GAAAAACTCA TTTCCGATCA TAATAATGAC 
    ACACTGAGTC TTGTGTATCT CTTTTCTTCT TTTGCTATTC TGTTTCACTT 
    TTTGTATGCG AACAATGAAA AAAAGCCTTT AAAGACTCTT CTGGCTAAAG 
    ACAAGTTCTT TTGATTGT

    Gene models with high sequence identity

    1. AT1G51650.1 [+] show detail - ATP synthase epsilon chain, mitochondrial
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D ATPase, F1 complex, epsilon subunit, mitochondrial 4.8e-18
    HMMPanther ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIAL 2.1e-26
    HMMPfam ATPase, F1 complex, epsilon subunit, mitochondrial 6.3e-22
    superfamily ATPase, F1 complex, epsilon subunit, mitochondrial 1.6e-16

    See the detailed result >

    AT1G51650.1

    Model type
    Protein coding
    Short Description
    ATP synthase epsilon chain, mitochondrial
    Computational Description
    ATP synthase epsilon chain, mitochondrial; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP biosynthetic process, ATP synthesis coupled proton transport; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, epsilon subunit, mitochondrial (InterPro:IPR006721); Has 247 Blast hits to 247 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 12; Plants - 69; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR