F19151

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19151

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19151

Determination of introduced cDNA(s)

RAFL09-33-M18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-33-M18 - Resource: pda06020

full reading [+] show sequence

AAGTTTGGCC TCCGTTTCCA GATTTTTATT CAATTCTTCT TAATCAACTT 
TTAAAATCCG GCGACTCATA GTCCGTGAAT TTTGACCGGC ATATCCGGTT 
TTGGTGTCGT CGGTAAATTC CTCTTCATTG CAGTGGAAGC TGGTTCATTG 
AGAAATAATG GATGCATTTA GAGATGCTAT ATTGCAGCGA GCTCCAATTG 
AAACCTTTGC ACTCAAGACT GTTCAACACT TTATACAACC TCAGAAACAA 
ACAAAGTTGG CTCAAGATGA AAACCAAATG CTTGAAAACA TGCTCCGGAC 
ATTGCTGCAG GAGCTAGTGG CTGCTGCTGC GCAATCAGGG GAGCAAATTA 
TGCAGTATGG TCAGTTGATT GACGATGATG ATGATGATGA TGATATACAT 
GGACAGATTC CTCATCTTCT AGATGTTGTG CTTTATCTTT GTGAGAAAGA 
GCATGTAGAA GGTGGCATGA TATTCCAGCT GCTGGAGGAT TTGACCGAAA 
TGTCTACTAT GAAAAACTGT AAAGATGTTT TCGGTTATAT TGAAAGCAAA 
CAAGATATAT TGGGCAAGCA AGAGCTTTTT GCACGCGGAA AACTTGTCAT 
GTTGAGGACT TGCAACCAAC TTCTCCGCCG ACTCTCAAAG GCCAATGATG 
TTGTATTCTG TGGAAGGATT CTTATGTTTT TGGCTCACTT TTTTCCGTTA 
TCTGAGCGCT CAGCCGTCAA TATAAAAGGT GTTTTTAATA CATCTAATGA 
AACCAAATAT GAAAAAGATC CTCCAAAAGG CATTTCTGTA GATTTCAACT 
TCTACAAGAC ATTTTGGAGT TTACAGGAGT ATTTCTGTAA TCCCGCTTCT 
CTTACTTCCG CATCTACCAA GTGGCAGAAA TTTTCATCCA GTTTGGCGGT 
TGTTTTAAAC ACCTTTGATG CTCAACCACT AAGCGAAGAA GAGGGAGAGG 
CTAATAGTTT GGAGGAAGAG GCAGCAACTT TTAATATAAA GTACCTAACA 
AGTAGTAAAT TGATGGGTTT AGAGTTAAAG GATTCGAGTT TCCGACGACA 
TATTCTTCTC CAGTGCCTCA TTATGTTTGA TTATCTAAGG GCACCAGGGA 
AGAACGACAA AGATCTGCCA TCTGAAACCA TGAAGGAAGA ACTTAAGTCA 
TGTGAGGATC GTGTAAAGAA ATTGCTTGAG ATCACTCCGC CTAAAGGGAA 
AGAATTCCTC CGTGCAGTTG AGCATATACT GGAGCGCGAA AAGAATTGGG 
TCTGGTGGAA ACGTGATGGA TGTCCACCAT TTGAAAAGCA ACCGATAGAT 
AAGAAATCAC CTAATGCAGG GCAAAAGAAA CGGAGACAAA GATGGAGATT 
GGGAAATAAA GAACTCTCCC AACTTTGGAG ATGGGCAGAT CAAAATCCGA 
ATGCTTTGAC TGATTCTCAA CGCGTGCGAA CCCCTGATAT TGCAGACTAC 
TGGAAACCAT TAGCAGAAGA TATGGATCCA TCAGCTGGCA TAGAAGATGA 
GTACCATCAT AAAAACAACA GAGTTTACTG CTGGAAAGGT CTTCGGTTTA 
CAGCTCGGCA AGACCTTGAA GGATTTTCTA GGTTTACTGA AATGGGAATC 
GAAGGAGTTG TCCCAGTTGA ACTATTGCCG CCTGAGGTCC GGTCCAAATA 
CCAAGCTAAA CCAAACGAAA AAGCCAAACG AGCGAAGAAA GAAGAAACCA 
AAGGTGGATC TCATGAAACA GAGGGAAACC AGATTGGTGT TTCTAATAGT 
GAAGCTGAAG CTGAAGGAGG AAGGGGTGAT GCAGAGACGA TGGAGAGTGA 
TGCTATTGCA GACACTCCTA CGCCTGAGGA ACAGCAAAGA CTCGGTGGTT 
CTGATACAGA AAACGGTCAA GAGGCCGGTC AAATCGAAGA CGGAGAGACA 
GAAGAAGCTG GTCTGATGGA CACTGATCTT GATCATCCTC CTATGCCCGT 
CTCATGAATA CGCTTTCAGT TTGTCGACCC TTTCTTCAAT GGGGAATCCT 
TTGGATATGA AGTTCAAAAG TATTGATGTT TAACAAATTA TGTTAAAAGG 
TATTTTCTAA ATATGTTTGT ATGAGTGCAA ATCTGCTAGC TTATTACCTG 
TCTTTCCATT TCTATATACT CAACAAAATC ATCATACAAT TAAGTTCTTT 
TGCGTAAAAC

Gene models with high sequence identity

AT5G09860.1 [+] show detail - nuclear matrix protein-related
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	THO COMPLEX SUBUNIT 1	7.5e-196
HMMPfam	THO complex, subunit THOC1	1.3e-52
HMMPfam	THO complex, subunit THOC1	1.3e-76

See the detailed result >

AT5G09860.1

Model type: Protein coding
Short Description: nuclear matrix protein-related
Curator Summary: Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.
Computational Description: THO1; CONTAINS InterPro DOMAIN/s: THO complex, subunit THOC1 (InterPro:IPR021861); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR