F19339

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19339

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19339

Determination of introduced cDNA(s)

  • RAFL06-09-P22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-P22 - Resource: pda02965

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-P22 - full reading 
    ATCATCTTCT TCACTAAACA AAAAAAAACC CTTCAAAACA TTTCCTTATT 
    CTTTCTTCTT CATCTACAAC AATGGCTGGA GTTGCCTTTG GTTCCTTTGA 
    TGATTCATTC AGCTTGGCTT CTCTAAGAGC TTACCTCGCT GAGTTCATCT 
    CCACTTTACT CTTTGTTTTC GCTGGTGTTG GCTCTGCCAT TGCCTACGCA 
    AAGCTGACGT CGGACGCTGC TCTTGATACA CCGGGACTAG TGGCCATCGC 
    GGTTTGTCAT GGTTTTGCTC TCTTCGTGGC CGTTGCAATC GGAGCCAACA 
    TCTCCGGTGG CCATGTGAAC CCAGCCGTCA CTTTTGGTCT TGCTGTCGGT 
    GGTCAAATCA CAGTCATCAC CGGAGTTTTC TACTGGATCG CTCAGCTTCT 
    CGGCTCCACC GCCGCTTGTT TCCTCCTTAA ATACGTCACC GGTGGATTGG 
    CGGTTCCAAC CCACAGCGTT GCGGCTGGAC TAGGATCGAT AGAAGGAGTA 
    GTGATGGAGA TCATCATCAC CTTCGCTTTG GTCTACACTG TCTACGCCAC 
    CGCCGCTGAT CCCAAGAAGG GTTCTCTCGG AACCATCGCT CCTCTCGCCA 
    TTGGTCTTAT CGTTGGTGCC AACATCCTCG CCGCCGGTCC ATTCTCCGGT 
    GGATCCATGA ACCCAGCACG TTCCTTTGGA CCAGCTGTTG CTGCCGGAGA 
    CTTCTCTGGT CACTGGGTCT ACTGGGTTGG ACCACTCATC GGTGGTGAAC 
    TTGCCGGACT TATCTACGGA AATGTCTTCA TGGGTTCTTC CGAACATGTT 
    CCTCTTGCTT CTGCTGATTT CTAAGGAAAC AAGTGATGAT TCTTGATTCA 
    TGTTTCTGTG TTTGGTTACT TTGCCTCGAT CTTTCTTGTT TTGTTTGGAG 
    TTTGGTCCGG TTTCGTTGTA ATTTTTATC

    Gene models with high sequence identity

    1. AT3G16240.1 [+] show detail - delta tonoplast integral protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Major intrinsic protein, conserved site 0
    Gene3D Major intrinsic protein 2.9e-63
    FPrintScan Major intrinsic protein 8.8e-56
    FPrintScan Major intrinsic protein 8.8e-56
    FPrintScan Major intrinsic protein 8.8e-56
    FPrintScan Major intrinsic protein 8.8e-56
    FPrintScan Major intrinsic protein 8.8e-56
    FPrintScan Major intrinsic protein 8.8e-56
    HMMPanther TONOPLAST INTRINSIC PROTEIN 7.1e-126
    HMMPanther Major intrinsic protein 7.1e-126
    HMMPfam Major intrinsic protein 4.7e-76
    superfamily Major intrinsic protein 2.2e-62
    HMMTigr Aquaporin 5.3e-68

    See the detailed result >

    AT3G16240.1

    Model type
    Protein coding
    Short Description
    delta tonoplast integral protein
    Curator Summary
    Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.
    Computational Description
    delta tonoplast integral protein (DELTA-TIP); FUNCTIONS IN: water channel activity, ammonia transmembrane transporter activity, urea transmembrane transporter activity, methylammonium transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: in 10 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2;3 (TAIR:AT5G47450.1); Has 10937 Blast hits to 10900 proteins in 2182 species: Archae - 87; Bacteria - 5160; Metazoa - 1503; Fungi - 423; Plants - 2497; Viruses - 0; Other Eukaryotes - 1267 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR