F19439

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19439

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19439

Determination of introduced cDNA(s)

  • RAFL05-10-L11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-L11 - Resource: pda17047

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-L11 - full reading 
    CCCTGGACGG AATCTATAAG ATAATTTTCT CCCTAGGGAT TAGGGCTCAC 
    AATCTCAAAT CTCTGATTCT TCGATACGAT AAATTCTTCC TCGATATAGA 
    AACCACTGAT TAGATCCTAA TTCGTCGCCT AGCTCAAAAG ATGGTGCTTT 
    CGCAAAAGCT TCATGAAGCA TTTAAAGGAA CAGTTGAGAG GATCACAGGT 
    CCTCGTACGA TCTCGGCGTT CAAGGAGAAG GGAGTTCTCA GCGTCAGCGA 
    GTTCGTACTT GCCGGAGATA ATCTCGTCTC CAAGTGTCCC ACCTGGTCTT 
    GGGAATCTGG TGACGCAAGC AAAAGGAAGC CATACTTGCC CTCGGACAAA 
    CAGTTTTTGA TTACTAGAAA TGTACCTTGT CTACGGAGAG CTGCTTCTGT 
    GGCAGAGGAT TATGAAGCTG CTGGAGGTGA AGTGTTGGTT GATGATGAAG 
    ATAATGATGG TTGGCTGGCT ACACATGGGA AACCGAAAGA TAAAGGCAAG 
    GAAGAGGATA ACTTACCATC CATGGATGCC TTGGATATAA ACGAGAAAAA 
    TACTATCCAA TCAATACCTA CGTATTTTGG AGGTGAGGAG GATGATGATA 
    TTCCAGACAT GGAGGAGTTC GATGAGGCTG ACAATGTGGT AGAAAATGAT 
    CCGGCAACTC TTCAGTCAAC TTATCTTGTG GCTCATGAAC CTGATGACGA 
    TAACATTCTC CGAACTCGGA CATATGATCT CAGCATAACG TATGATGAGT 
    ATTACCAAAC TCCTCGTGTT TGGCTGACCG GTTATGATGA GTCAAGGATG 
    CTGCTGCAAC CTGAACTTGT AATGGAGGAT GTTAGCCAAG ACCATGCTCG 
    TAAAACGGTC ACAATCGAAG ATCATCCACA CTTGCCTGGT AAACATGCTT 
    CAGTTCATCC ATGTCGGCAT GGAGCTGTTA TGAAGAAAAT CATTGATGTA 
    TTAATGTCGC GTGGAGTAGA ACCTGAAGTC GACAAGTACC TCTTCCTGTT 
    CTTGAAGTTC ATGGCATCAG TTATTCCAAC AATTGAGTAC GATTACACAA 
    TGGACTTTGA TCTCGGTAGC TCAAGCACCT AATATCAGAT TTAAACAAGT 
    ATGTGCTCGT GAATCCGGGA AACAAGTATG GTCTCATGGA TGGCTGGATG 
    GCTCTGCACT GTACATAAAA CAGAGTCCTC ACTTTCATTT CTCTCCAAGA 
    TAAACTTTAA GGTGTTGTGG TTTAATCACT CGTTTATCTA AAGTTTACGC 
    TGATGAATAG TAATTTGTGA CAAAACTCTG AAAACGGGTA TTTGATCAAA 
    ACTGATTCGG TGTGGTTCAA GAAAAAAA

    Gene models with high sequence identity

    1. AT5G61500.1 [+] show detail - autophagy 3 (APG3)
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AUTOPHAGOCYTOSIS PROTEIN AUT1-RELATED 1.4e-157
    ProfileScan Egg jelly receptor, REJ-like 8.635
    HMMPfam Autophagy-related protein 3, N-terminal 4.5e-44
    HMMPfam Autophagy-related protein 3 5.5e-24
    HMMPfam Autophagy-related protein 3, C-terminal 9.1e-16

    See the detailed result >

    AT5G61500.1

    Model type
    Protein coding
    Short Description
    autophagy 3 (APG3)
    Computational Description
    ATG3; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 3 (InterPro:IPR007135), Autophagy-related protein 3, C-terminal (InterPro:IPR019461), Autophagy-related protein 3, N-terminal (InterPro:IPR007134); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR