F19451

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19451

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19451

Determination of introduced cDNA(s)

  • RAFL05-17-B11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-B11 - Resource: pda02711

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-B11 - full reading 
    ACATCCATCA CTTATAACTA AAAACACAAA TCAAGATAAA ATGGCGGAAG 
    AGCAAGCAGC GACGGCAATG GAAACATCGG CGGTGGAGAA GCAGCCAGAG 
    ACGACGACAG AGGCTGAAGC ACCAAGTTTG ACGACGAAGA GGATGGTGGT 
    TGCGATTGAT GAGAGCGACT CGAGCTTCTA CGCTCTCCAA TGGGTCATTG 
    ACCATTTCTC TAATCTTTTA TTGACCACAG CGGCAGCTGA GGCGGAAAGT 
    GGAATGCTCA CGGTGATTCA TGTGCAGTCC CCTTTCAATC ACTTTGCTGC 
    CTTTCCGGCT GGACCGGGCG GCGCCACAGC AGTGTACGCA TCTTCATCAA 
    TGATAGAGTC AGTGAAAAAG GCACAACAAG AGACCTCTGC TGCCCTTCTC 
    TCTCGCGCTC TCCAAATGTG CCGAGCCAAG CAGATACGTA CTGAAACTCT 
    AGTGCTAGAA GGCGAGGCGA AGGAGATGAT TTGTGAGGCG GTGGAGAAAA 
    TGCACGTTGA TCTTCTCGTT GTGGGTAGTC GTGGCCTTGG CAAGATCAAA 
    AGAGCGTTTC TTGGGAGCGT TAGCGATTAC TGCGCTCATC ACGCCAACTG 
    CCCCATCCTT ATTGTCAAGC CACCTAAGGA GATGACTAAG TAATATGGAG 
    CTGTTTACAT GTTTGGGTTA TTAGTACGAA TTTTATAATG AGTGTGCCAT 
    AATTTACCTA AAAAAT

    Gene models with high sequence identity

    1. AT3G11930.2 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Universal stress protein A 1.7e-16
    FPrintScan Universal stress protein A 1.7e-16
    FPrintScan Universal stress protein A 1.7e-16
    superfamily Adenine nucleotide alpha hydrolases-like 1.6e-30
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.4e-29
    HMMPfam UspA 3.4e-32

    See the detailed result >

    AT3G11930.2

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Computational Description
    Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G58450.1); Has 5467 Blast hits to 5289 proteins in 1122 species: Archae - 381; Bacteria - 3940; Metazoa - 138; Fungi - 108; Plants - 754; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR