F19511

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19511

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19511

Determination of introduced cDNA(s)

  • RAFL09-49-M01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-M01 - Resource: pda06424

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-M01 - full reading 
    AGACATCACA GATATGGCTT GTGTTCGGTC GATTGGTTCT TTAACTTCTG 
    TCAACCATTC TCAACGAAAT GTTCCTCGCT CAGGCATTGT CTTATCTTCA 
    TGCTCTGTTC TTCCCATCAA AAGCTCATCT TTCACTGGAT CCCCTGTTTC 
    TCTCCCGCGG GCTCAACCAT CATCCCGAAC AGCTCTAAGA CCGATGAAAC 
    CCGTCTCTAT CACGATGATG GTAAAGCCGG CGCTCCAATT CATCCAAGGG 
    ACGGATGAGA TGACAATCCC TGATGTTAAG CTGACTCGAT CAAGAGACGG 
    AAGCAACGGA ATGGCACTGT TCTCTTTCGA CCAACCATCC GTTTTCGACT 
    CGAGCGGTGA AGTCGGAGAG ATTACAGGAT TGTACATGAT TGATGAGGAA 
    GGTGTGATTC AGTCGACGGA TGTGAACGCG AGATTCGTGA ATGGGAAACC 
    GGAAGGGATT GTGGCGAAGC ACATAATGCG ATCGCCGAAA GAATGGGACA 
    GGTTCATGAG GTTTATGGAG CGATACTCGG ACCAGAATGG CTTGCAGTTT 
    GTTAAGAAGC AATGAGGTTG GAGAGAATTT TCAATGAGCA AAACAAAATG 
    TGTATGTTAC ATTAAATTTT TTCACTCTTT TGATTTATAA TCTTGTACTC 
    TCCTAGTTTT GATCTTTACT TGAGTTTCAA CTTACAATGG C

    Gene models with high sequence identity

    1. AT4G28660.1 [+] show detail - photosystem II reaction center PSB28 protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Photosystem II protein Psb28, class 1 7e-52
    HMMPfam Photosystem II protein Psb28, class 1 2e-42
    HMMTigr Photosystem II protein Psb28, class 1 2.3e-65
    HAMAP Photosystem II protein Psb28, class 1 28.95

    See the detailed result >

    AT4G28660.1

    Model type
    Protein coding
    Short Description
    photosystem II reaction center PSB28 protein
    Curator Summary
    Similar to PsbW subunit of photosystem II.
    Computational Description
    photosystem II reaction center PSB28 protein (PSB28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, photosystem II reaction center, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein Psb28, class 1 (InterPro:IPR005610); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR