F19638

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19638

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19638

Determination of introduced cDNA(s)

  • RAFL04-18-D10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-18-D10 - Resource: pda02355

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-18-D10 - full reading 
    GAGCCACCAT CGTCCTCTTC TCTTCCTCTT CGATCTCTCC TGAATCCTCA 
    AACCCTGGAG AGAGAGAGAG AGAGTGACGG GGGAAGAAGA TGACTTCTGC 
    TTTGTATGCT TCCGATTTGT TTAAGCAGCT CAAGTCAATT ATGGGGACAG 
    ATTCGTTATC CGACGATGTT GTACTTGTGA TTGCAACGAC GTCTTTGGCA 
    CTAGTAGCTG GATTTGTGGT GTTGTTATGG AAGAAAACGA CGGCGGATCG 
    GAGCGGGGAG CTGAAGCCTT TGATGATCCC TAAGTCTCTT ATGGCTAAGG 
    ACGAGGATGA TGATTTGGAT TTGGGATCCG GGAAGACTAG AGTCTCTATC 
    TTCTTCGGTA CGCAGACTGG AACAGCTGAG GGATTTGCTA AGGCATTATC 
    CGAAGAAATC AAAGCGAGAT ATGAAAAAGC AGCAGTCAAA GTCATTGACT 
    TGGATGACTA TGCTGCCGAT GATGACCAGT ATGAAGAGAA ATTGAAGAAG 
    GAAACTTTGG CATTTTTCTG TGTTGCTACT TATGGAGATG GAGAGCCTAC 
    TGACAATGCT GCCAGATTTT ACAAATGGTT TACGGAGGAA AATGAACGGG 
    ATATAAAGCT TCAACAACTA GCATATGGTG TGTTTGCTCT TGGTAATCGC 
    CAATATGAAC ATTTTAATAA GATCGGGATA GTTCTTGATG AAGAGTTATG 
    TAAGAAAGGT GCAAAGCGTC TTATTGAAGT CGGTCTAGGA GATGATGATC 
    AGAGCATTGA GGATGATTTT AATGCCTGGA AAGAATCACT ATGGTCTGAG 
    CTAGACAAGC TCCTCAAAGA CGAGGATGAT AAAAGTGTGG CAACTCCTTA 
    TACAGCTGTT ATTCCTGAAT ACCGGGTGGT GACTCATGAT CCTCGGTTTA 
    CAACTCAAAA ATCAATGGAA TCAAATGTGG CCAATGGAAA TACTACTATT 
    GACATTCATC ATCCCTGCAG AGTTGATGTT GCTGTGCAGA AGGAGCTTCA 
    CACACATGAA TCTGATCGGT CTTGCATTCA TCTCGAGTTC GACATATCCA 
    GGACGGGTAT TACATATGAA ACAGGTGACC ATGTAGGTGT ATATGCTGAA 
    AATCATGTTG AAATAGTTGA AGAAGCTGGA AAATTGCTTG GCCACTCTTT 
    AGATTTAGTA TTTTCCATAC ATGCTGACAA GGAAGATGGC TCCCCATTGG 
    AAAGCGCAGT GCCGCCTCCT TTCCCTGGTC CATGCACACT TGGGACTGGT 
    TTGGCAAGAT ACGCAGACCT TTTGAACCCT CCTCGAAAGT CTGCGTTAGT 
    TGCCTTGGCG GCCTATGCCA CTGAACCAAG TGAAGCCGAG AAACTTAAGC 
    ACCTGACATC ACCTGATGGA AAGGATGAGT ACTCACAATG GATTGTTGCA 
    AGTCAGAGAA GTCTTTTAGA GGTGATGGCT GCTTTTCCAT CTGCAAAACC 
    CCCACTAGGT GTATTTTTTG CTGCAATAGC TCCTCGTCTA CAACCTCGTT 
    ACTACTCCAT CTCATCCTCG CCAAGATTGG CGCCAAGTAG AGTTCATGTT 
    ACATCCGCAC TAGTATATGG TCCAACTCCT ACTGGTAGAA TCCACAAGGG 
    TGTGTGTTCT ACGTGGATGA AGAATGCAGT TCCTGCGGAG AAAAGTCATG 
    AATGTAGTGG AGCCCCAATC TTTATTCGAG CATCTAATTT CAAGTTACCA 
    TCCAACCCTT CAACTCCAAT CGTTATGGTG GGACCTGGGA CTGGGCTGGC 
    ACCTTTTAGA GGTTTTCTGC AGGAAAGGAT GGCACTAAAA GAAGATGGAG 
    AAGAACTAGG TTCATCTTTG CTCTTCTTTG GGTGTAGAAA TCGACAGATG 
    GACTTTATAT ACGAGGATGA GCTCAATAAT TTTGTTGATC AAGGCGTAAT 
    ATCTGAGCTC ATCATGGCAT TCTCCCGTGA AGGAGCTCAG AAGGAGTATG 
    TTCAACATAA GATGATGGAG AAGGCAGCAC AAGTTTGGGA TCTAATAAAG 
    GAAGAAGGAT ATCTCTATGT ATGCGGTGAT GCTAAGGGCA TGGCGAGGGA 
    CGTCCACCGA ACTCTACACA CCATTGTTCA GGAGCAGGAA GGTGTGAGTT 
    CGTCAGAGGC AGAGGCTATA GTTAAGAAAC TTCAAACCGA AGGAAGATAC 
    CTCAGAGATG TCTGGTGATT GATGATATGA TTTATTGGTA ATTCTCTTCT 
    GCTTTCTCAA CTTTTCTTGG TACGCTGTCC TTACCATTTA GATATTTATT 
    TGTTTATTTT CCTTCGTCTC CCTTCTTTTA GTCAAACATG AATGATTTGT 
    CAAAGTTTTC TTTGTATGAA CAAAAGTATA AACTACAAAC

    Gene models with high sequence identity

    1. AT4G24520.1 [+] show detail - P450 reductase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam FAD-binding, type 1 8.6e-77
    HMMPfam Flavodoxin/nitric oxide synthase 4.1e-35
    HMMPfam Oxidoreductase FAD/NAD(P)-binding 1.4e-18
    Gene3D no description 1.9e-40
    Gene3D no description 1.4e-38
    Gene3D no description 4.2e-58
    superfamily Riboflavin synthase-like beta-barrel 3e-79
    superfamily Ferredoxin reductase-like, C-terminal NADP-li 1.8e-52
    superfamily Flavoproteins 7.3e-43
    HMMPanther NADPH Cytochrome P450 Reductase 0
    HMMPanther FLAVODOXIN-RELATED 0
    ProfileScan Flavodoxin/nitric oxide synthase 31.695
    ProfileScan Ferredoxin reductase-type FAD-binding domain 12.549
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7e-37
    FPrintScan Flavodoxin-like 3.5e-20
    FPrintScan Flavodoxin-like 3.5e-20
    FPrintScan Flavodoxin-like 3.5e-20
    FPrintScan Flavodoxin-like 3.5e-20

    See the detailed result >

    AT4G24520.1

    Model type
    Protein coding
    Short Description
    P450 reductase 1
    Curator Summary
    Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism.
    Computational Description
    P450 reductase 1 (ATR1); FUNCTIONS IN: NADPH-hemoprotein reductase activity; INVOLVED IN: response to oxidative stress, phenylpropanoid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADPH Cytochrome P450 Reductase (InterPro:IPR015702); BEST Arabidopsis thaliana protein match is: P450 reductase 2 (TAIR:AT4G30210.2); Has 6349 Blast hits to 5969 proteins in 1541 species: Archae - 6; Bacteria - 2994; Metazoa - 1048; Fungi - 898; Plants - 566; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR