F19843

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19843

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19843

Determination of introduced cDNA(s)

  • RAFL11-09-C20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-09-C20 - Resource: pda17980

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-09-C20 - full reading 
    CGATTTCTCA GCTTTTTAAA TGTATTTTAT ATTTCCCCTT TGAGCAAGAA 
    AAGAGTTGCA GAGATCTTTG AGTCTGACAC AGAGACCAAA CTCACATAGC 
    AATCACACAC ATCTCCACAA ACACAGCTTG AGATGATCAT GAAACACGTG 
    CATCCTCAGA TCTCTATCAA TCCAGCTTGG TGAAAGAAGG TCAAGAATTG 
    AAAGAGAATC AAAGAAAACG ACGTCGTTTC ATTCGTGTGT AACAACTACT 
    AATTATACAT AGATGGCTGC TTACTTTCAC GGAAACCCAC CGGAGATCTC 
    TGCCGGATCC GACGGTGGTC TTCAAACGTT GATCCTCATG AATCCAACTA 
    CTTACGTTCA GTACACCCAA CAAGACAACG ACTCGAACAA CAACAACAAC 
    AGCAACAATA GCAACAACAA CAACACAAAC ACAAACACAA ACAACAACAA 
    CAGTAGTTTC GTTTTCCTCG ATTCCCACGC GCCGCAGCCA AACGCGAGCC 
    AGCAGTTCGT CGGAATACCA CTCTCAGGTC ACGAAGCTGC TTCCATTACA 
    GCCGCCGACA ACATCTCCGT ACTTCACGGT TATCCTCCGC GCGTGCAGTA 
    CAGTCTCTAC GGTAGCCACC AAGTGGATCC CACTCACCAG CAAGCCGCGT 
    GTGAGACGCC ACGCGCGCAG CAAGGCCTCT CTTTAACCCT CTCGTCTCAA 
    CAGCAGCAGC AACAGCAACA TCATCAACAA CACCAGCCTA TTCACGTCGG 
    ATTCGGGTCC GGACATGGAG AAGATATCCG GGTCGGGTCT GGCTCTACAG 
    GATCGGGGGT AACAAACGGT ATAGCTAATC TTGTTAGCTC CAAGTACTTG 
    AAGGCAGCAC AAGAGCTTCT TGACGAAGTA GTCAACGCTG ATTCCGATGA 
    CATGAACGCT AAATCCCAAC TATTCTCATC GAAAAAGGGT AGTTGCGGAA 
    ATGATAAACC TGTCGGAGAA TCATCGGCCG GCGCTGGAGG AGAAGGTTCC 
    GGTGGCGGAG CAGAAGCAGC CGGGAAACGT CCGGTGGAGC TAGGCACGGC 
    AGAGAGACAA GAAATACAGA TGAAGAAAGC AAAACTTAGT AACATGCTTC 
    ATGAGGTGGA GCAGAGATAT AGACAGTACC ACCAGCAGAT GCAGATGGTG 
    ATCTCTTCGT TCGAGCAAGC GGCAGGGATA GGATCAGCGA AGTCATACAC 
    GTCGCTAGCA TTGAAAACCA TATCAAGACA GTTCCGTTGC TTGAAAGAGG 
    CGATCGCTGG TCAGATAAAA GCGGCCAACA AGAGTCTTGG GGAGGAAGAT 
    TCAGTGTCTG GTGTTGGGAG GTTTGAGGGG TCGAGGCTCA AGTTCGTGGA 
    CCACCACTTG AGACAGCAAA GAGCTCTTCA ACAACTGGGA ATGATTCAAC 
    ATCCTTCCAA TAATGCTTGG AGACCTCAAC GTGGTCTCCC AGAACGAGCC 
    GTCTCAGTTC TCCGTGCTTG GCTCTTCGAA CACTTTCTTC ATCCATACCC 
    TAAGGATTCG GACAAGCACA TGCTAGCTAA GCAAACAGGA CTCACTCGTA 
    GCCAGGTGTC GAACTGGTTT ATAAACGCGA GAGTTCGGTT ATGGAAACCA 
    ATGGTGGAGG AGATGTACAT GGAGGAAATG AAGGAGCAGG CAAAGAACAT 
    GGGATCCATG GAAAAGACTC CTTTGGATCA AAGCAACGAA GATTCTGCTT 
    CAAAGTCAAC AAGTAACCAA GAAAAGAGCC CAATGGCGGA CACTAATTAC 
    CATATGAATC CCAATCACAA CGGTGACCTA GAAGGCGTCA CTGGAATGCA 
    AGGAAGCCCC AAGAGACTAA GAACCAGCGA CGAGACAATG ATGCAGCCAA 
    TAAATGCGGA TTTCAGCTCC AACGAGAAGC TCACGATGAA GATTCTAGAA 
    GAACGGCAAG GGATAAGATC AGATGGTGGC TACCCTTTCA TGGGTAATTT 
    CGGGCAATAC CAAATGGATG AGATGTCAAG ATTTGATGTA GTCTCAGACC 
    AGGAGCTCAT GGCGCAAAGG TACTCAGGAA ACAACAATGG CGTGTCCCTC 
    ACGTTAGGTT TACCTCATTG TGATAGCTTG TCGTCCACGC ACCATCAGGG 
    TTTCATGCAG ACCCACCATG GGATTCCTAT AGGGAGAAGA GTGAAAATAG 
    GAGAAACAGA GGAATATGGA CCCGCCACCA TCAATGGTGG TAGCTCGACC 
    ACAACCGCAC ATTCATCAGC GGCAGCTGCC GCGGCTTACA ATGGGATGAA 
    CATACAGAAC CAGAAGAGAT ATGTGGCTCA GTTATTGCCC GACTTCGTTG 
    CATAAACCCA TCTCTCTAGA AGGAGAAACC GAAACAGGTT ATTATATACG 
    TTTCTAGTTT TTAATTAGTA TATAGTTTCT CATACCATTG AACCAAAACA 
    AAGAACAAAA TTTAATTTTA GTCTTTGGTT ATATATGGCC GACGGTTGTA 
    TATCGATTTT GTAATTTTTT TTTTTTCGTT TCTATTGGGG GATGGATAGG 
    GTTATATATG TATATGGATT AGTTACGTGT AATAGCTTGC ATTGGGTGTA 
    TACCAAAATA TATTTTTACT TTTATTACAA TGTAATAATT AATAAGATAA 
    AAAAAAAA

    Gene models with high sequence identity

    1. AT2G35940.1 [+] show detail - BEL1-like homeodomain 1
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR11850 0
    HMMPanther PTHR11850:SF14 0
    ProfileScan Homeobox 0
    HMMPfam POX 5.10000000000004e-45
    HMMSmart Homeobox 1.59999889349252e-09
    HMMPfam Homeobox 0.0003
    Gene3D Homeodomain-related 8.1e-16
    HMMSmart POX 1.39999277195148e-86
    superfamily Homeodomain-like 2.5e-17

    See the detailed result >

    AT2G35940.1

    Model type
    Protein coding
    Short Description
    BEL1-like homeodomain 1
    Curator Summary
    Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.
    Computational Description
    BEL1-like homeodomain 1 (BLH1); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 71711 Blast hits to 13510 proteins in 414 species: Archae - 28; Bacteria - 75; Metazoa - 3080; Fungi - 2154; Plants - 2539; Viruses - 2; Other Eukaryotes - 63833 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR