F19951

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19951

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19951

Determination of introduced cDNA(s)

  • RAFL09-23-M17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-23-M17 - Resource: pda08055

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-23-M17 - full reading
    GAACAATTCA TTCTTCTGGG TGTGTTGTGT TTGAGTTTTT GGATCATACG 
    AAGAAGAAAT CGGCGGGAGA AGCTATGTCG AGGCTATGGG CGAGATTTGC
    GGGATTGTTC AGTAGCAAGA GTTTTATCGG AGTAGACAAG ACTGGTAACA
    AGTACTTTTC CAGAATGGAG GAGATTGACG GATTCGTGAA GGAGAAAAGA
    TGGGTCAAGT TTAGACGAGA GGAGGACCCA ACCTCTATTC CTGTTGAATG
    GATTTGTTGG CTGAATGGGC AGCGAAAAAG GGCTCCTACT CCTGAGGAAA
    TGATTGAACT TGAAGCAAGG CGTGAGCGTG TAAAGCTTAA TGTTGCTCTT
    CTCAAGAAGG AAGAGGAGGA GAAGAAAGCC AGAGTAGGCA CCGGACGCAA
    AATCACCATT GGTAAAGTTG ATGGTCCAGA TTTGACAAGC TTTGTTCGCC
    AATTTCCACC AGATTCAAAA GGTGGTGAAC CAGAGGAAGC TAGTGAAGAA
    GCAGATAAAT CAAGGGCCAA GGAACATGAA CCCGAGATAG TTTCTGCAGA
    ACCACCCGAA CCAAAGACAA CAGAGCCATC AGGATCTGGA TCATCATTTA
    GGCCCGGGAC ATGGCAGCCA CCATCCTAAA CACATCTCTC TTCACGCAGA
    TGACAAACCA ACATACTATT CAATTATTTT GTTTGTTGTA CTCTACACAA
    CCGATTGGTT TGAGCCTTAC AGATGAGCCA TAAGACCAGA GAGCTTTTCA
    AGACCCTAAA ATTGTGTCCT TTCACGCTGT CATTGAGGAC TTAGAAGAGT
    CAAAATGAGA AGCCATCTTC TTATACTTTG TTTTGTTTAG GGTGTTTGTC
    TCTTGGCATA ATGCTTGAGA CTTTTAGCCT GCCTTGTCCT TCATAGCTGA
    AGAGGAGCCT AGCTACCTTT TGTTTCTCTT CGTTGACTTG AATAAAACAG
    TTTGATTGAA TAACAGTTAT TCATTTTCAT GTCATAAAAA AAAAAAAAAA
    A

    Gene models with high sequence identity

    1. AT4G26965.1 [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NADH:ubiquinone oxidoreductase, 17.2kDa subunit 0.00027
    Coil coiled-coil 0
    HMMPfam NADH:ubiquinone oxidoreductase, 17.2kDa subunit 2.9e-13

    See the detailed result >

    AT4G26965.1

    Model type
    Protein coding
    Short Description
    NADH:ubiquinone oxidoreductase, 17.2kDa subunit
    Computational Description
    NADH:ubiquinone oxidoreductase, 17.2kDa subunit; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, 17.2kDa subunit (InterPro:IPR007763); Has 317 Blast hits to 317 proteins in 96 species: Archae - 0; Bacteria - 24; Metazoa - 85; Fungi - 52; Plants - 37; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR