F20241

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20241

Determination of introduced cDNA(s)

  • RAFL06-82-N08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-N08 - Resource: pda07714

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-82-N08 - full reading 
    GGAGGAGAAG AAATCAACAA CTTAAGAATA AAGAATGTCG TATCCGACTT 
    CGAACCAAAG CCCCATGCCA AAGTCACATA CACACACTTC TACATACCCT 
    AAACACACAC ACTCGAATAC ATAAACTCTT TTCTATATAT AAACTTCTTA 
    TAAGCCATTT GCTTAAACAA CTCTCAAGTA AAAAAAAAAA AATCAACAAT 
    CTCTAAACTC TTCTCTGTTT TCTGATCTGT TCCAATGGAG ATTAATTGGA 
    CAAGAGGACC AATCATCGGT CGAGGCTCTA CCGCCACTGT CTCTATAGCA 
    ATCTCAAGCT CCGGTGAGCT CTTCGCCGTC AAATCTGCCG ACTTATCTTC 
    TTCGTCCTTG TTGCAGAAAG AGCAATCAAT CTTGTCTACA TTGAGCTCTC 
    CTCACATGGT CAAATACATA GGCACTGGTT TAACGCGCGA GAGCAACGGA 
    TTGGTGTACA ATATACTGAT GGAATACGTT TCTGGTGGAA ATCTTCACGA 
    TTTAATCAAA AATTCCGGCG GTAAGTTGCC GGAGCCGGAG ATAAGATCAT 
    ACACTCGTCA GATTCTTAAC GGTTTGGTGT ATCTTCACGA GAGAGGGATT 
    GTTCACTGCG ACTTGAAGAG CCATAACGTT CTGGTTGAGG AAAATGGCGT 
    TTTGAAAATC GCCGACATGG GTTGTGCTAA ATCGGTTGAC AAGTCGGAAT 
    TTTCCGGTAC ACCGGCGTTT ATGGCCCCAG AAGTTGCTCG TGGTGAAGAA 
    CAGAGGTTTC CGGCTGATGT GTGGGCTTTG GGATGTACGA TGATCGAGAT 
    GATGACTGGA TCAAGCCCTT GGCCGGAGTT AAACGACGTT GTTGCTGCAA 
    TGTATAAGAT TGGATTTTCA GGCGAGTCGC CGGCGATTCC CGCGTGGATA 
    TCGGATAAAG CTAAAGACTT TCTGAAGAAT TGTTTAAAGG AAGATCAAAA 
    ACAGAGATGG ACTGTGGAAG AATTACTTAA ACATCCATTT CTTGATGACG 
    ACGAAGAATC TCAGACAAGT GATTGTTTGA AGAACAAGAC TTCTTCTCCA 
    AGCACTGTGT TGGATCAACG ATTTTGGGAT TCATGCGAAA GCTCCAAAAG 
    TCACTTAGTT TCGATTGATC ATGAAGACCC TTTTGCTGAA TACTCGGAAT 
    CTTTGGATTC ACCGGCTGAT CGGATCGAGA AACTCGCCGG AGATGAGTTT 
    TCAAGCTTAC TTGATTGGGA TACGGAAGAC GATGGCGGAT GGATTCAAGT 
    GAGAGGCGAG AAACATAAAG AAACCGAGAA ACGCGACGGC GACGAAGACG 
    TGATTTGCGT TGAAGCAACG TCATCGTCGC AAACGATTGA AGAAGTTGAA 
    GATTGGATTT CGAATCAAGA CAGCTTGTTC TCGGAATATT CCTCTGACGA 
    CATCATTAAT AATTTCT

    Gene models with high sequence identity

    1. AT4G26890.1 [+] show detail - mitogen-activated protein kinase kinase kinase 16
      E-value: 0; Score: 99.86

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 3.8e-58
    HMMSmart Serine/threonine-protein kinase domain 9.6e-77
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.2e-13
    superfamily Protein kinase-like domain 9.2e-73
    Gene3D no description 3.5e-55
    HMMPanther MITOGEN ACTIVATED PROTEIN KINASE-RELATED 9e-186
    HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 9e-186
    ProfileScan Protein kinase, catalytic domain 43.467
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT4G26890.1

    Model type
    Protein coding
    Short Description
    mitogen-activated protein kinase kinase kinase 16
    Curator Summary
    member of MEKK subfamily
    Computational Description
    mitogen-activated protein kinase kinase kinase 16 (MAPKKK16); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 15 (TAIR:AT5G55090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR