F20415

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20415

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20415

Determination of introduced cDNA(s)

RAFL04-16-J04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-J04 - Resource: pda12196

full reading [+] show sequence

AATCTCTCTT TTCACATCAC CGATTCAGAG AGAACACCGA ATATGACCGC 
CGATTCAACC GTCGCACTCG TTCATAGCGT CGTTTCTAAC GGTGATGTCT 
CCAACGGAAA CACCTCCGCT TCCTCTAAGA AATCTCGTGA GATTGACCGT 
CGCCGCCGCA GACGGAAGCA GAAGAAGAAC AACAAAGCAT CCCAAGCCGA 
TGTAGATGCA TCGGACGTTT CTGCTGCTTC TGAATCCAAA GAGAATACAG 
ATCCCCAGCC ACAGGTTTGT GAGCAGATTG TGATAGAGTA TGTTCCAGAG 
CAAGCTGAAT TTGAAGATGG TTTTAACGAT GAGTTTAAGG AAATCTTCGA 
GAAGTTCAAC TTCCGCGAAC CTCTTGCCTC TGAAGAAGAC GGTACGAAAG 
ATGAGTCTGA GGAGAAAGAA GATGTCAAAA AGAAGGTTAA CTCTGATTCT 
GATTCAGACG ACGACGAGCA GGATAATCAG AACAAAGAGA AAGGCATCTC 
TAATAAGAAG AAAAAGCTTC AACGGAGAAT GAAGATTGCT GAGCTGAAGC 
AGGTTTCCGC TAGGCCTGAT GTTGTTGAGG TCTGGGACGC GACTTCAGCA 
GATCCAAAGC TGTTAGTGTT TTTGAAGTCG TACCGGAATA CAGTTCCTGT 
TCCAAGACAT TGGTCGCAGA AGAGAAAATA TTTGCAGGGA AAGCGTGGGA 
TAGAGAAGCA GCCATTTCAT CTTCCTGATT TCATTGCTGC AACCGGAATT 
GAGAAGATTA GACAGGCTTA CATTGAGAAA GAAGATGGTA AGAAATTGAA 
GCAAAAGCAA CGGGAGAGAA TGCAACCAAA AATGGGAAAG ATGGACATTG 
ACTACCAGGT ACTTCATGAT GCATTTTTCA AATACCAAAC AAAGCCTAAG 
CTGTCAGCTC TAGGCGATTT GTATTTTGAA GGGAAAGAAT TTGAGGTTAA 
ACTGAGGGAA ACGAAACCAG GGTTTTTGTC AAACGACTTA AAAGAAGCTC 
TTGGTATGCC TGAAGGCGCT CCTCCCCCAT GGCTGATTAA CATGCAGAGA 
TATGGTCCGC CTCCTTCTTA CCCACATCTG AAAATTCCTG GTTTGAATGC 
TCCTATTCCA ATTGGAGCTA GCTTTGGTTT TCATGCTGGC GGCTGGGGGA 
AACCTCCAGT TGACGAATAT GGGCGTCCAT TGTATGGAGA TGTTTTTGGT 
GTCCAGCAAC AAGATCAGCC TAACTACGAG GAGGAGCCAA TTGATAAGAG 
CAAGCACTGG GGTGATTTAG AGGAAGAGGA AGAAGAAGAG GAGGAGGAAG 
AAGAGGAACA AGAAGAGGAG ATGGATGAAG AGGAACTAGA AGACGGCACT 
GAATCTGTTG ATACACTGTC AAGCACTCCT ACTGGTATAG AGACACCGGA 
TGCAATTGAA CTTCGTAAGG ATCAGAGAAA GGAACCTGAT AGGGCTCTAT 
ACCAGGTACT CGAGGAAAAG GGAGAGAGTG TTGCTCCTGG AACATTGCTG 
GGAACCTCAC ACACATACGT TATTAAGACT GGTACTCAAG AAAAGACGGG 
AGCCAAAAGG GTTGATTTGC TGAGAGGGCA GAAGACAGAC AGAGTGGATG 
TCAGCTTACA GCCAGAAGAG CTGGATGCTA TGGAAAATGT TTTACCTGCC 
AAGTATGAGG AGGCAAGAGA AGAGGAGAAA TTGCGCAATA AGCCAGTGGA 
CTTGAGTGAC ATGGTCGTCG AGCATGTGCA GCAGAATAGT AGGAAGAGGA 
AAATGCATGA CAAGGAAGGG AAGAAGAAGA AAGATTTCAA ATTCTGAGGT 
GTTCTGGAAG AGACACGGAA AAGGATTCTG GATTCTGGAC ATGAGAGAGA 
TAGGGAGAGA TTCTTGTTCC AGAGTTATTA GTCTTTGAGT CAGAGATCTT 
GAGTTTTAGT CTTAATGCTT ATGAGATTCT ATACTATGTT GTTATCTGAA 
GGCTTAAGTA AAACTTTGTT TTTGGAATTT

Gene models with high sequence identity

AT4G21660.1 [+] show detail - proline-rich spliceosome-associated (PSP) family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF382	5.5e-61
HMMPfam	PSP, proline-rich	8e-23
HMMPanther	SUBFAMILY NOT NAMED	2.7e-198
HMMPanther	FAMILY NOT NAMED	2.7e-198
HMMSmart	PSP, proline-rich	4.8e-29
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT4G21660.1

Model type: Protein coding
Short Description: proline-rich spliceosome-associated (PSP) family protein
Computational Description: proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1); Has 10486 Blast hits to 6076 proteins in 488 species: Archae - 22; Bacteria - 303; Metazoa - 4991; Fungi - 920; Plants - 455; Viruses - 239; Other Eukaryotes - 3556 (source: NCBI BLink).
Link: InterPro Scan - TAIR