F20527

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20527

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20527

Determination of introduced cDNA(s)

  • RAFL05-01-G05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-01-G05 - Resource: pda00738

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-01-G05 - full reading 
    AAAGAAATTA AAAGTGTTCT TGTTGCTGTA GAACACAAAC AGAACAAACA 
    AAAAATCAAT TGAAGAGTCT CTCAGTCGTT AGGGGAAGCA AATAGAGAAA 
    TGGCTAGCTT TACTGCCTCC GCTTCCACCG TCTCCGCCGC TCGTCCGGCT 
    CTCCTTCTCA AGCCTACCGT CGCCATCTCT GCTCCTGTTC TTGGTTTGCC 
    TCCAATGGGT AAGAAGAAGG GAGGAGTGAG ATGTTCAATG GAGACAAAGC 
    AAGGAAACGT CTCAGTCATG GGGGCTGGAG TTTCAGCTGC AGCAACAGCT 
    GCTTTGACGG CGGTGATGAG CAATCCCGCG ATGGCTTTGG TTGATGAGAG 
    GATGTCAACA GAAGGAACAG GATTACCCTT TGGTCTAAGC AACAACCTCT 
    TGGGTTGGAT TCTGTTTGGA GTCTTTGGTT TGATCTGGAC TTTCTTCTTC 
    GTCTACACTT CATCTCTCGA GGAGGATGAA GAATCTGGTC TTTCACTCTG 
    AAGGAAGAAT CAATCTTTCG TCTTCTCATT TCCATTTTCA TGTGAGAACA 
    TGAATCAAAA GTGTTCACCC TTCTAGTTTC TTGTAATTGT TAAGTAAAGA 
    CTAAAAACTA TTTTCATGTG TGTTT

    Gene models with high sequence identity

    1. AT2G30570.1 [+] show detail - photosystem II reaction center W
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G30570.1

    Model type
    Protein coding
    Short Description
    photosystem II reaction center W
    Curator Summary
    Encodes a protein similar to photosystem II reaction center subunit W.
    Computational Description
    photosystem II reaction center W (PSBW); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbW, class 2 (InterPro:IPR009806); Has 77 Blast hits to 77 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR