F20604

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20604

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F20604

Determination of introduced cDNA(s)

  • RAFL09-38-K03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-38-K03 - Resource: pda17710

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-38-K03 - full reading 
    GATAATTGAA ACAAACAAAG AAAAAAGTGG ATTCTCAAAA TTGAATGAAG 
    CAACGAACGA TTCAACATCA AATCTAGCTG AATTATTGTT TCGCGTTGAT 
    TGATTGATCC GGAGAAAGGC GATGACATCG CCTGGATCGA AGAAAGTTGT 
    TACCACCGAC GACGGATCGG AGAAGAAAGT TTCCGGCAAT CTCGGAAAAG 
    TAAGTTTTTC CGGAGATCTT AATCATAGTG GAAGCCATAG TGGAAGCCAT 
    AGTCGTAGCA GCAGCAGCGC CGGAGGTGGT GAAGGAGGAA CGTTTGAGTA 
    TTTCGGATGG GTTTATCATT TGGGTGTGAA TAAGATCGGT CATGAGTACT 
    GTAATCTTCG TTTCCTTTTC ATTAGAGGCA AATATGTTGA GATGTATAAA 
    AGAGATCCTC ATGAGAACCC AGACATTAAA CCTATAAGGC GTGGTGTCAT 
    AGGGCCGACA ATGGTGATTG AAGAGCTAGG ACGTCGAAAA GTTAATCATG 
    GGGATGTCTA CGTTATAAGG TTCTATAACC GGTTGGACGA GTCAAGGAAA 
    GGAGAAATTG CTTGTGCTAC TGCTGGAGAA GCCCTGAAAT GGGTTGAGGC 
    TTTTGAGGAA GCAAAGCAGC AGGCTGAATA TGCACTATCG AGAGGCGGAA 
    GTACAAGAAC AAAGTTAAGC ATGGAGGCCA ACATCGATCT GGAAGGACAT 
    CGGCCTAGAG TACGGCGTTA TGCTTATGGA TTAAAAAAGC TTATCCGAAT 
    TGGGCAAGGT CCAGAGTCTC TTTTGAGGCA ATCATCTACC CTGGTTAATG 
    ATGTCAGGGG TGATGGTTTC TATGAGGGTG GTGACAATGG AGATGCAATC 
    GAGGCACACG AATGGAAATG TGTTCGTACA ATCAATGGTG TTAGGATTTT 
    TGAAGATGTT GCTAACTTCA AGGCTGGTCG AGGAGTTCTT GTGAAAGCCG 
    TTGCTGTAGT TGAAGCAAGT GCGGATACCG TGTTCGAAGT ACTTTTGAAC 
    ATTGACAAAC ATCAAAGATA CGAGTGGGAT GCAGTAACAG GTGATTCGGA 
    AAAGATAGAC TCATACGAGG GTCACTATGA TGTCATTTAT TGCATATACG 
    ATCCTAAATA TCTTTCGCGA TGGCAGTCAA AGAGAGATTT TGTGTTCTCT 
    AGACAGTGGG TTCGTGGGCA AGATGGGACA TATACAATCT TACAGTTTCC 
    AGCAGTGCAT AAGAAACGGC CTGCAAAGTC TGGATATCGA CGTACAGAAA 
    TCACGCCATC AACTTGGGAA ATCAAAAGCT TAAAAAAGCG CAGCGATGCA 
    GAAACTCCAA GTTGTCTTGT AACACACATG CTAGAAATCC ACTCTAAACG 
    TTGGTGCAAA TGGAAGAGGA CCAGCTACTC AAAGTTTGAA AAGACTATTC 
    CATATGCATT ACTCCTCCAA GTAGCAGGTC TGAAGGAGTA CATTGGAGCA 
    AACCCAGCCT TCAAGTATGA AACTTCCGCC ACGGTTGTCC AGTCCAAGTT 
    CCAAGATGTC CCCAATGGTG AATATGTAGA TGAAGAAATG GAGGAGCAGT 
    TTTATGATGC CACGGACTCA TCATCTGGAG AAGAGGATGA GGAGGAAAGC 
    GATGACGATG ATGAAAATCA GGACAATAAG GAGATAAAAG TTAAACTGAA 
    GAATGTTTCA TGGGCAATCG CTAGCTTATC TTTGAAGCGA CCTAAAGCTC 
    CAGGCGCAAG TAATGTATTA GACGCTAGTG TTGATCCTGT GAGTATCGAT 
    CCAAGTCAGT TCCAAGGATC TCTGCGCAAA GGAAATGGTG ATAAGGACTC 
    AAATTGCTGG AATTCTCCTA GTGGCATGGG GTTTATGATC AGGGGAAAGA 
    CCTACCTAAA AGATAATGCA AAGGTGATGG GTGGGCAGCC CCTTCTAACA 
    CTTATATCAG TGGATTGGTT CAAAGTTGAT AGTGCTGTAG ACAACATCGC 
    CCTGCATCCA AAATGTCTTA TCCAGTCGGA ACCTGGGAAA AAGCTCCCAT 
    TCATCCTAGT CATCAATCTA CAGGTACCAG CAAAGCCTAA CTATTGTCTG 
    GTACTCTACT ATGCTGCGGA TCGACCTGTA AACAAGACTT CATCCCTGGG 
    AAAATTCGTG GATGGGAGTG ACAGTTACCG CGACGCAAGA TTTAAGCTAA 
    TTCCAAGTAT TGTTCAGGGA TATTGGATGG TCAAGCGGGC TGTTGGAACA 
    AAAGCCTGCT TGCTCGGTAA AGCTGTGACC TGTAAGTACC TGAGGCAGGA 
    TAACTTTTTG GAGATTGATG TAGATATTGG ATCATCGGCT GTTGCGAGGA 
    GCGTTATTGG TCTGGTCCTT GGTTATGTCA CAAGCCTCAT TGTTGATCTC 
    GCCATCTTGA TTGAGGGAAA GGAGGAAAGC GATTTGCCCG AGTATATCCT 
    TGGGACAGTT CGACTTAACC GAATAGAGCT GGACTCAGCC GTATCATTTG 
    AGGAATGAGA CCATCCAGTG CCGACTATAA CATGTGACAT ATGTCTTATG 
    GATTGCGACC CTTTGGCCAA AACAAAAATA ACATATGAAT AATGAAAGAT 
    TGAACCGTAC AATTTTTCTT CTTTTCTTTC AGAGATTGTA AGCTCAGACG 
    AGTGAAGAGG TTTAGTTTTT TCAAGGTGGA ATGGTTTATA AGTTAATGAA 
    CTTTGAAGTC GTTACTGATA AAAGATTTGA CTTTTTGCTC AAAAAAAAAA

    Gene models with high sequence identity

    1. AT5G35180.1 [+] show detail - Protein of unknown function (DUF1336)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Lipid-binding START 18.845
    Gene3D no description 3.3e-11
    superfamily Bet v1-like 8.9e-19
    HMMPfam Protein of unknown function DUF1336 1e-75
    HMMPfam Lipid-binding START 8.6e-08

    See the detailed result >

    AT5G35180.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1336)
    Computational Description
    FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ENHANCED DISEASE RESISTANCE 2 (TAIR:AT4G19040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR