F20838

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20838

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20838

Determination of introduced cDNA(s)

  • RAFL09-39-M09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-39-M09 - Resource: pda08304

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-39-M09 - full reading 
    ATGATTCCAT TTCTGCAGGA AGGTTTATTT TGCCAGAACC GGGTGGTTAG 
    CAATCGCGCT ATTACCAACC CCCTTCGCAC TTTTCTTGCT TGCATCATCA 
    GGAACTGCAT CAGCATTACA AGCTGGAACA GCGCTGATGG GTTTAAGCTC 
    CGGGTTTATC TTTGCAGCAG CGGTTTCCAT CACATCAGAG CTTTTTGGAC 
    CAAACAGTGT TGGAGTTAAC CACAATATCT TAATCACAAA CATACCGATA 
    GGATCATTGA TCTATGGATT CTTGGCTGCA TTGGTCTATG ACTCACATGG 
    TTTCACCGGG ACCAAATCAA TGACCTCGGA GTCGGTGGTG TGTATGGGAC 
    GAGATTGTTA TTACTTGACC TTTGTGTGGT GGGGTTGCTT GTCTCTTCTT 
    GGGCTAGGTT CGAGTCTTGT GTTGTTTATT AGAACTAGAC GAGCTTATCA 
    ACGGTTTGAA CAAGCTCGTA TAAGTTCGAA CATCAACGAC TCTTAGAAAT 
    TTGCATCAAC CCCAACGGTT TGTGTGTATA TGTAGGATCT AAATTATAAC 
    AGACGGATTA ATGGTATTTT AGTGGATTTT GGCTGAGGTT GATTAAAAAA 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT4G19450.1 [+] show detail - Major facilitator superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED NODULIN-LIKE PROTEIN 4.9e-58
    superfamily Major facilitator superfamily, general substrate transporter 2.9e-08

    See the detailed result >

    AT4G19450.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G45275.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR