F20932

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20932

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20932

Determination of introduced cDNA(s)

  • RAFL16-85-G12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-85-G12 - Resource: pda10324

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-85-G12 - full reading 
    GGCCAAAAAC CCCAATTTTG CCAAATCCAA TTTTACACCC AGAAACCCTA 
    ATTTTCCTTA CTTTGATTTG ATTTTGTGAT GGACGATTAT ACAAGAGAGA 
    TGATGGATCT CAAGACTTTG GTCACTCGAA CCCTAGAGAA GAAAGGTGTC 
    CTCGCTAAGA TCCGGGCTGA GCTCCGTGCA AGTGTGTTTG AAGCAATTGA 
    AGAAGAGGAT AGAGTGATAG AGAACAATGA AGGACCGCCT CCAGCTCTGT 
    TGGGAAGCTG TAATGATCGT GCAAGGAAGC TTCATGCTTC TCCTTCAGGA 
    AGGTTACTAT CTGCGTTGAT TTGTGAATAC TTGGACTGGG CACAACTTAA 
    TCACACGCTC ATAGTTTATC AACCTGAAAG CAATTTGCCA AAAGATTCGT 
    GGAAGTCTGA GTTACGCGAC TTTAATAGCA ACAATGGTTT TGAGCTCAAT 
    AGAAATGGAG ATAGTGGACC ACTCCTTCTC GATGTTCTTG AAGGGTTCTT 
    GAAGTTTGAG AGCATGACGC AGGGCATGGG TAGTAGTTCA AGGAGAGATT 
    CAGAAACAGA GTCGTCATCA AGCCTTGAGT CCAGAAATCC TCCTCGCAGA 
    TCATCTGCTT CTGATAGCTT ACCTCCTCAA CGAAGGCCGG TTTCTGCATC 
    TCAAGCATCG GATAGAAGAG CCGGGTTGTC TACATCTGGG TACAGAAAAG 
    ATGAATTCAA CTGGAGACAA GGTAACCAAG ATACACATGA AGAGGTAACA 
    AGAGCTTCAG CGGCGCTGGA AAATCTACAG CTTGATAGGA AAACTCGGAA 
    CTTAACATCG TCTTGGAGGA ATGTGAGGGA TGGAACAAAT GAAGAAGAAG 
    GGAGAGATTG ATTTAGGCTT TGGATAAACA TTTCAGCTTC TGGATTAGTA 
    GAGTAATGGT TTGTGTACGT GATATATGTA TGTTTCTCCT TTATTTGCAA 
    CTGCGTTTTC AATTAGCCTT TTTTTTAACG CACGAACCTC TGTCTCCTTG 
    AGAACAAAAA ACATGAAACA GTAAAATGTT TTCTTTTGAG

    Gene models with high sequence identity

    1. AT3G55000.1 [+] show detail - tonneau family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam FGFR1 oncogene partner (FOP), N-terminal dimerisation domain 4.1e-07
    ProfileScan LisH dimerisation motif 8.7
    Coil coiled-coil 0
    HMMPanther SUBFAMILY NOT NAMED 5.9e-216
    HMMPanther FAMILY NOT NAMED 5.9e-216

    See the detailed result >

    AT3G55000.1

    Model type
    Protein coding
    Short Description
    tonneau family protein
    Curator Summary
    Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1A can functionally complement TON1B and their roles appear to be redundant in plants. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1A associates with plant centrins CEN1 and CEN2.
    Computational Description
    TONNEAU 1A (TON1A); INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FGFR1 oncogene partner (FOP), N-terminal dimerisation domain (InterPro:IPR018993), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: tonneau 1b (TON1b) (TAIR:AT3G55005.1); Has 229 Blast hits to 226 proteins in 73 species: Archae - 0; Bacteria - 3; Metazoa - 122; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR