F20946

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20946

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20946

Determination of introduced cDNA(s)

  • RAFL09-67-K21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-K21 - Resource: pda08674

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-K21 - full reading 
    ACTCTTCTCC ATTTTCTTCT CTTCTTCTCT TCTTTGTCCA TTTTTTGACA 
    GATATGGCGA TCTGGTTTGC TAGATCCAAA ACCCTTGTTT CTAGCTTGAG 
    ACATAATCTA AATTTGTCGA CAATTCTCAT AAAACGTGAT TACTCTCATC 
    GTCCCATCTT CTATACAACT TCTCAGTTAT CTTCAACGGC GTATTTGAGT 
    CCCTTCGGTA GCCTCCGTCA TGAGTCTACG GCCGTGGAGA CACAGGCTGA 
    TCATTTGGTT CAGCAGATTG ATGAAGTCGA TGCCCAGGAA CTGGATTTCC 
    CAGGAGGCAA AGTCGGTTAC ACATCGGAGA TGAAATTCAT ACCGGAATCA 
    TCTTCAAGGA GGATTCCATG TTACCGGGTT CTTGACGAAG ACGGACGAAT 
    CATCCCCGAT AGCGATTTTA TTCCGGTGAG TGAGAAACTC GCTGTTAGAA 
    TGTACGAACA AATGGCGACG CTACAAGTAA TGGATCACAT CTTCTACGAA 
    GCTCAACGTC AAGGAAGAAT ATCTTTTTAT CTTACTTCCG TCGGAGAAGA 
    AGCCATTAAC ATCGCTTCAG CAGCTGCTCT CAGTCCTGAC GACGTCGTTT 
    TACCTCAGTA CCGAGAACCT GGAGTTCTTT TGTGGCGTGG CTTCACGTTG 
    GAGGAGTTTG CTAATCAGTG TTTTGGGAAC AAAGCTGATT ATGGCAAAGG 
    CAGACAAATG CCAATTCATT ACGGTTCCAA TCGTCTTAAT TACTTCACTA 
    TCTCCTCTCC AATTGCCACG CAACTTCCTC AAGCTGCTGG AGTTGGTTAT 
    TCTTTGAAAA TGGACAAGAA GAATGCTTGT ACTGTTACAT TCATCGGAGA 
    TGGTGGCACA AGCGAGGGAG ATTTTCACGC CGGATTGAAT TTTGCGGCCG 
    TAATGGAAGC TCCGGTTGTG TTTATATGTC GGAACAACGG TTGGGCGATT 
    AGTACTCATA TCTCAGAACA GTTTAGAAGT GATGGAATAG TTGTGAAAGG 
    TCAAGCTTAC GGTATCCGAA GCATCCGTGT GGACGGTAAC GATGCACTTG 
    CGGTTTATAG TGCTGTACGC TCAGCTCGAG AAATGGCTGT AACAGAACAA 
    AGACCTGTTC TCATTGAGAT GATGACATAT AGAGTAGGAC ATCATTCTAC 
    ATCAGATGAT TCAACTAAGT ACAGGGCGGC GGATGAAATC CAGTACTGGA 
    AAATGTCGAG AAACCCTGTG AATAGATTTC GGAAATGGGT CGAAGATAAC 
    GGATGGTGGA GTGAGGAAGA TGAATCCAAG CTAAGATCTA ACGCAAGAAA 
    ACAGCTTCTG CAAGCGATTC AGGCTGCGGA GAAGTGGGAG AAACAACCAT 
    TGACAGAGTT GTTTAACGAT GTATATGATG TTAAACCGAA GAACCTAGAA 
    GAGCAAGAAC TTGGTTTGAA GGAATTAGTA AAGAAACAAC CTCAAGATTA 
    TCCTCCTGGC TTTCATGTTT GAATCTAGAG GAACTGTGTG GTTAAAATAC 
    CTCATATAGT ATCATGTCCA TATCGACTTC TCATTGCAGA CTATTTATAT 
    TGTCCACGTA TCGAATAGTA ATCAAGTATC AATGTAGAGA CCAGCATTTG 
    GAGCATCATG AAATGGCCTT GAGAATGTTA TTTTCATGGT CCGGCTGACC 
    CTTAACCGGT TCAAACTGGA GTAAATGAGT GAATGTTAAT GCTCGAGAAT 
    GGGTGAGGCT CCGTTAATCG TTAAGAAAAA AACGTGCCTA CCTAGCCAAA 
    TGACATCTTC CTCTTTTGTG TTTAGCACAA GTGAATGATC CAAATATCAT 
    CTACCTAATA TGACCCATAA AATAGTATGT GATTGTCTTT GGATGTTATC 
    CCATAACATA ACTTAAATTT GGGATGCATG CATATATTAT ATACTTCATA 
    TAAAATGAGT GGACCTCATA AGTTGCGGTT TCGATTTTTA T

    Gene models with high sequence identity

    1. AT1G21400.1 [+] show detail - Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Dehydrogenase, E1 component 2.8e-96
    Gene3D no description 5.9e-137
    superfamily Thiamin diphosphate-binding fold (THDP-bindin 4.9e-110
    HMMPanther 2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT- 1e-225
    HMMPanther PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SU 1e-225

    See the detailed result >

    AT1G21400.1

    Model type
    Protein coding
    Short Description
    Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
    Computational Description
    Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT5G09300.1); Has 9510 Blast hits to 9506 proteins in 1925 species: Archae - 124; Bacteria - 6142; Metazoa - 513; Fungi - 243; Plants - 187; Viruses - 0; Other Eukaryotes - 2301 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR