F20948

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20948

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20948

Determination of introduced cDNA(s)

  • RAFL09-94-G18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-94-G18 - Resource: pda09061

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-94-G18 - full reading 
    AGTTTGAAAT TTGAATCCAT TGAACCAAAA TTTGAAGGAG TTGCATATAT 
    AATAATATAA ATCAGAATGA TGTAGCCGCC ACACCTTTTT GTTTCCACAA 
    AACTCTTTTT CTGTGATGGA TCCGCTAATG TAGCCATATT TTCAATATAT 
    ATCACTTTCT CTGGCATCTT CGCTACCGTG TACGTCTCTC TTTCTCTCCC 
    TCCCCTCCTT GGCTTTTTTC AAGTTCCCAC CATAAACGCA GAGGGAGTTA 
    AGAAATGGAG GATAGGAGGT GTGATGTGTT GTTTCCATGT TCATCATCGG 
    TTGATCCTCG CTTGACAGAG TTTCATGGGG TCGACAACTC TGCTCAGCCG 
    ACAACATCAT CCGAAGAGAA GCCAAGGAGT AAGAAGAAGA AGAAAGAGAG 
    AGAAGCGAGG TACGCGTTCC AGACAAGAAG CCAGGTTGAT ATACTGGATG 
    ATGGATACAG GTGGAGGAAG TACGGCCAAA AAGCAGTCAA GAACAATCCA 
    TTCCCCAGGT ACGTACTTAA TCATCAATGA ATGATACTGT ATGCTTGCTA 
    TGGTGATCAA ATAAGAGACT CATATACATA CATGTAAAAT ATGAATATAT 
    ATATATATAG GAGCTATTAT AAGTGCACAG AAGAAGGATG CAGAGTGAAG 
    AAGCAAGTGC AGAGGCAATG GGGAGACGAA GGAGTGGTGG TGACGACATA 
    CCAAGGTGTT CATACACATG CCGTTGATAA ACCCTCTGAT AATTTCCACC 
    ACATCTTGAC ACAAATGCAC ATCTTCCCTC CCTTTTGCTT GAAGGAATGA 
    TTAGAGGAAT TGGATTGTAA TATTTACTTT CCCAAAAACG TTGGGCTCAC 
    ACCATCAGAC CTTTT

    Gene models with high sequence identity

    1. AT3G01970.1 [+] show detail - WRKY DNA-binding protein 45
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-08
    Gene3D no description 1.6e-09
    ProfileScan DNA-binding WRKY 14.114
    ProfileScan DNA-binding WRKY 15.411
    HMMPfam DNA-binding WRKY 6.7e-10
    HMMPfam DNA-binding WRKY 4e-14
    HMMSmart DNA-binding WRKY 0.00064
    HMMSmart DNA-binding WRKY 8.1e-08

    See the detailed result >

    AT3G01970.1

    Model type
    Protein coding
    Short Description
    WRKY DNA-binding protein 45
    Curator Summary
    member of WRKY Transcription Factor; Group I
    Computational Description
    WRKY DNA-binding protein 45 (WRKY45); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 75 (TAIR:AT5G13080.1); Has 3497 Blast hits to 3049 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3482; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR