F21203

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21203

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F21203

Determination of introduced cDNA(s)

  • RAFL06-83-B22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-B22 - Resource: pda03844

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-83-B22 - full reading 
    GGAGACCAAG AGTGCGAAGT AGCTCTCTGT CTTTCGAAGC AGAAGTGAGA 
    CTTTGACGAC AACAGTGGGA GGAACTATGA GTTCTTGTGT TGTGACGACA 
    AGCTGTTTCT ATACAATTTC AGATTCTAGT ATACGTTTGA AATCCCCCAA 
    GCTCCTCAAT CTGAGTAACC AGCAGAGAAG ACGCTCTCTT AGGTCTCGAG 
    GTGGTTTAAA GGTTGAAGCT TACTACGGTC TAAAGACACC TCCTTATCCA 
    CTTGATGCTT TGGAGCCGTA TATGAGTAGA AGAACACTAG AAGTGCATTG 
    GGGAAAACAC CATCGAGGTT ATGTAGATAA TCTGAATAAA CAGTTAGGGA 
    AAGATGATAG ACTCTATGGA TACACCATGG AAGAGCTTAT CAAGGCTACA 
    TACAACAACG GGAATCCTTT ACCCGAGTTC AACAACGCTG CACAGGTCTA 
    TAACCATGAT TTCTTCTGGG AGTCGATGCA ACCTGGTGGT GGAGACACGC 
    CTCAAAAGGG TGTTCTTGAG CAGATTGATA AGGATTTTGG TTCTTTCACA 
    AATTTTAGAG AAAAGTTCAC TAATGCAGCT CTTACTCAGT TTGGTTCTGG 
    ATGGGTCTGG CTTGTCTTAA AGAGGGAAGA GAGAAGGCTT GAGGTGGTCA 
    AAACCTCAAA CGCCATTAAC CCACTCGTGT GGGACGATAT TCCAATCATC 
    TGCGTGGATG TGTGGGAGCA CTCTTATTAT CTGGACTACA AGAACGACAG 
    GGCTAAGTAT ATAAACACAT TTCTGAACCA CTTGGTGTCG TGGAACGCTG 
    CCATGAGTCG GATGGCCCGT GCAGAAGCGT TTGTGAATCT TGGTGAACCC 
    AACATCCCAA TCGCTTAAGC TAAACACAAC TCCTTGGAAA CTTGGGCAGT 
    CTCATTTTTG CAAACAGAGG TCTCAAGTCC CAAGTCCCAA CCAACAAAAC 
    AAGAGTTGCT TTCTGAATGT GACCCATCTT TTTGTTCTGT GTAATTTAGC 
    GACAGTTTTC TCTTCTTTTG CCTTTTGAGA GACTCTCTAG CTTTAAGATC 
    ATCAGTGAGC CCTGTATGGT GACAGTAATG TTAGTGACGC AATTAACCCT 
    TATTAAGTTA TAATAAAACG AAGGCTGGCT CACGTGACCC GCACGTGACT 
    GAGAGTATCA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT5G23310.1 [+] show detail - Fe superoxide dismutase 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Manganese/iron superoxide dismutase, C-terminal 2.2e-40
    superfamily Manganese/iron superoxide dismutase, N-terminal 5.8e-33
    FPrintScan Manganese/iron superoxide dismutase 1.4e-18
    FPrintScan Manganese/iron superoxide dismutase 1.4e-18
    FPrintScan Manganese/iron superoxide dismutase 1.4e-18
    FPrintScan Manganese/iron superoxide dismutase 1.4e-18
    FPrintScan Manganese/iron superoxide dismutase 1.4e-18
    HMMPanther SUPEROXIDE DISMUTASE [FE] 3.9e-180
    HMMPanther Manganese/iron superoxide dismutase 3.9e-180
    PatternScan Manganese/iron superoxide dismutase, binding site 0
    HMMPfam Manganese/iron superoxide dismutase, C-terminal 3.7e-37
    HMMPfam Manganese/iron superoxide dismutase, N-terminal 7.3e-23

    See the detailed result >

    AT5G23310.1

    Model type
    Protein coding
    Short Description
    Fe superoxide dismutase 3
    Curator Summary
    Fe superoxide dismutase
    Computational Description
    Fe superoxide dismutase 3 (FSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: removal of superoxide radicals; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR