F21235

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21235

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21235

Determination of introduced cDNA(s)

  • RAFL09-06-I01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-I01 - Resource: pda05091

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-06-I01 - full reading 
    AAAAAAAACC TCTCACTGCA AAGTGCCAAC AAACAACAAG TCTTCACCTT 
    CTTCTTCTTC TTCTTCTTCA AAATCTCTTG TACGCAAATA ATCCATGAGA 
    AACTAGGGTT TAACTTGAGA TCTCTCTTCC GAAGTATTAC CATCAATGGC 
    GACTTCTTCT TCTTCATCGT CGTCTCTGCT TTTACCAAAC ATCAATTTCA 
    ACTCAAGACA ATCTCCAACA ATCACTCGTT CCGTTTCAAT CGCCGGGATC 
    TTCTTACCCA GAAACCGATT AAGCTACAAT CACAATCTCC GGATTCGTAC 
    GAGATTAATC AGAGCTTCTA AAGACGATAA TGTCGCTGTT GAAGATCGTG 
    ATAATGCAGT GAAGATCAAC GGTGATTACA ACGGAAGTGC ACGTTTAAAC 
    GGTAACGGCT CTGCGAGAAA ATCCGTCAAC GGAGATTTTA ACGGAAGTGC 
    TCGTTTGAAC GGTAACGGTA GTTTGGTGAA GTATGTGAAC GGAAGTGTAA 
    CGGTGGAAAC GGAGGAAGTG ACAAAGAAGA GAAAAGAAGA AGTGAGGAAG 
    AAGAGAGTAG AAGATATTGG TCAAGAGGAT GCTTGGTTTA AGAACAACAC 
    TCAACAAAAA CAAGTTGAGG TTTCTGTTAC ACCTGGTGGT CGATGGAATA 
    GATTCAAGAC TTACTCAACT ATTCAAAGAA CATTGGAGAT TTGGGGTTTT 
    GTTGTACAGT TTATTTTCAG GACTTGGTTA AGCAATAAGA AGTTCTCTTA 
    TAAAGGGGGA ATGACTGAAG AGAAGAAGGT TTTAAGAAGG AAGGTTTTGG 
    CTAAGTGGTT GAAAGAAAAC ATTTTGAGAT TAGGTCCTAC ATTTATCAAA 
    ATTGGGCAAC AGTTCTCTAC TAGAGTGGAT ATTCTTCCTC AAGAGTATGT 
    TGATCAATTG TCAGAACTTC AGGATCAAGT TCCTCCTTTC CCTTCTGCTA 
    CAGCTTTATC CATTGTTGAA GAGGAGCTTG GAGGTTCTGT TGAGGACATT 
    TTCGACCGTT TTGATTATGA ACCTATAGCT GCAGCTAGTC TTGGGCAAGT 
    TCACCGTGCA AGACTTAAGG GTCAAGAGGT TGTCCTTAAA GTACAGAGAC 
    CTGGTCTGAA GGATCTCTTT GATATTGACC TTAAGAATTT GAGGGTGATC 
    GCTGAGTATC TCCAAAAGGT GGACCCAAAA TCAGATGGTG CAAAGAGAGA 
    TTGGGTTGCA ATCTATGATG AATGTGCCAG TGTTTTGTAC CAGGAAATTG 
    ATTACACAAA AGAAGCAGCT AATTCGGAGT TGTTTGCTAA TAACTTCAAA 
    GACTTAGAGT ATGTAAAAGT TCCATCCATC TACTGGGAAT ACACTACACC 
    TCAGGTCCTG ACAATGGAGT ATGTCCCTGG GATTAAGATT AACAAGATAC 
    AAGCCTTAGA TCAGTTAGGT GTTGATCGAA AAAGGCTAGG AAGATATGCT 
    GTTGAATCTT ACCTGGAGCA AATCTTATCT CATGGATTCT TCCACGCCGA 
    CCCTCACCCT GGGAATATAG CAGTTGATGA TGTCAATGGC GGGCGGCTGA 
    TATTTTACGA CTTTGGAATG ATGGGAAGTA TTAGCCCAAA TATTAGAGAA 
    GGTTTGTTGG AGGCATTTTA TGGCGTCTAT GAAAAGGATC CAGATAAGGT 
    CCTTCAAGCT ATGGTTCAAA TGGGAGTGCT TGTACCAACT GGAGATTTGA 
    CGGCAGTTAG AAGAACAGCA TTGTTTTTTC TCAACAGTTT TGAAGAGCGG 
    CTTGCTGCAC AAAGAAAGGA GAAAGAAGAA ATAGCAGCAG CAGAAGAGCT 
    TGGGTTCAAG AAGCCACTAA GCAAGGAAGA AAAGCAAGAG AAAAAGAAGC 
    AAAGGTTGGC TGCAATCGGA GAAGACTTAT TAGCCATTGC GGCTGATCAG 
    CCTTTCCGGT TCCCCGCCAC ATTCACATTT GTTGTTAGAG CCTTTTCAGT 
    ATTGGATGGC ATCGGCAAAG GTCTTGACCC CCGATTTGAT ATAACGGAGA 
    TTGCTAAACC CTATGCTTTG GAATTGTTGC GGTTTCGGGA AGCTGGAGTG 
    GAAGTTGTAG TAAAGGACCT GAGAAAGAGA TGGGACAGGC AATCACAAGC 
    ATTCTACAAT CTATTTAGAC AAGCGGATAG AGTTGAAAAG CTAGCTGTAG 
    TCATTGAACG ACTTGAGCAA GGTGATTTGA AGCTTAGGGT CCGAGCGCTA 
    GAGTCTGAGA GGGCATTTCA ACGCGTTGCA GCTGTTCAAA AAACAGTAGG 
    AAGTGCTGTT GCTGCAGGAA GTTTAGTCAA TCTCGCAACA ATTTTGTATC 
    TGAATTCTAT AAAAACACCT GCAACTATAG CATATACAGT ATGTGCTTTC 
    TTCAGCCTCC AAGTTCTAAT CGGAATCATA AAGGTTAAGA AGTTCGATCA 
    ACGGGAAAAA CTAATCACTG GAACAGCTTA AGAACTTGCT TGAAGAAATG 
    TATTAAAGCT TCTTCAATCT CCATAAACCC TTTTGTGCAT TTCACAGGAG 
    TGTTAACAAT TTCACTGGTC TGCAAATAAA ATTATCTTAT GGAAGCTTGA 
    GAGGCAAGAG ATGGTCAACT AGTCAAACCA CCACCACTCT CTCATCTCTG 
    TCTTCTTAAA GTTCGATAAT AATTTTTGGA GAGGAGACTC TGGTTGTTCA 
    TCAACAGAGT GGTCATGAGC CACATGTATT GCTTGTGTAT AGAGAGATTT 
    AGAAATTAGG AACTTTTTCG TATAAATATA CTCATTGTAC TCAGCTACTC 
    ACTAGACTCA TCTCTGTTTT AGTAATATTT TGAATACTGT ATCTCAAATA 
    AATTAATCTT AT

    Gene models with high sequence identity

    1. AT5G64940.1 [+] show detail - ABC2 homolog 13
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam ABC-1 5.8e-37
    superfamily Protein kinase-like domain 5.7e-22
    HMMPanther UBIQUINONE BIOSYNTHESIS PROTEIN AARF(E.COLI)/ 1.1e-200
    HMMPanther CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-REL 1.1e-200

    See the detailed result >

    AT5G64940.1

    Model type
    Protein coding
    Short Description
    ABC2 homolog 13
    Curator Summary
    Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.
    Computational Description
    ABC2 homolog 13 (ATH13); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G07700.2); Has 10051 Blast hits to 9997 proteins in 1795 species: Archae - 126; Bacteria - 4380; Metazoa - 442; Fungi - 487; Plants - 725; Viruses - 14; Other Eukaryotes - 3877 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR