F21645

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21645

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21645

Determination of introduced cDNA(s)

  • RAFL09-61-H10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-61-H10 - Resource: pda08520

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-61-H10 - full reading 
    ATCTTCTTCT TCTTCATCTA CCTAACTTAG GTTTTATCAA TCTCTCATTT 
    CCAACCATGG CTTCCTCCGC CGCCCAAATT CACATCCTCG GCGGAATCGG 
    ATTCCCTACT TCGTCTTCTT CCTCCTCCAC CAAAAACCTC GACAACAAAA 
    CCAATTCCAT TCCACGAAGC GTCTTCTTCG GCAACAGAAC AAGTCCTTTC 
    ACTACTCCAA CCTCCGCCTT CCTTCGTATG GGACGAAGAA ACAACAACGC 
    TTCCCGATAC ACCGTTGGTC CAGTCCGTGT GGTTAACGAG AAAGTCGTCG 
    GAATCGATTT AGGCACGACG AATTCAGCTG TTGCTGCTAT GGAAGGAGGT 
    AAACCAACGA TTGTGACTAA CGCTGAAGGT CAAAGAACTA CACCTTCTGT 
    TGTGGCTTAT ACTAAGAGTA AAGATAGACT TGTTGGTCAG ATTGCTAAAC 
    GTCAAGCTGT TGTTAATCCG GAGAATACTT TCTTCTCTGT TAAGAGGTTT 
    ATTGGTAGAA GAATGAATGA AGTTGCTGAA GAGTCTAAGC AGGTTTCTTA 
    TAGAGTTATT AAAGATGAGA ATGGTAATGT TAAGCTTGAT TGTCCTGCTA 
    TTGGTAAACA ATTTGCTGCT GAGGAGATTT CTGCTCAGGT TTTGAGGAAG 
    CTTGTGGATG ATGCTTCGAG ATTTTTGAAT GATAAAGTAA CGAAAGCTGT 
    CATCACTGTG CCTGCTTACT TCAATGATTC ACAAAGGACG GCTACTAAAG 
    ATGCTGGTCG TATTGCTGGA TTGGAAGTTC TTAGGATTAT TAATGAGCCT 
    ACTGCTGCTT CTTTGGCTTA TGGGTTTGAG AGGAAAAGCA ATGAAACTAT 
    TCTTGTTTTT GATCTTGGTG GTGGTACTTT TGATGTCTCA GTCCTTGAGG 
    TTGGTGACGG TGTTTTTGAA GTGCTTTCGA CTTCTGGTGA TACACATTTG 
    GGAGGTGATG ACTTTGACAA GAGAGTCGTT GATTGGCTTG CTTCAACCTT 
    CAAGAAGGAT GAAGGTATAG ATCTTCTCAA AGACAAGCAA GCGCTTCAGA 
    GGTTGACGGA GGCAGCTGAA AAAGCTAAAA TTGAGCTTTC CTCACTGACT 
    CAGACAAACA TGAGGTTCAC TTTTCCCTCT CAAATCTATT TACCTCGTTC 
    CCATTGGTAT GTAGGATATT AACTGATTTC GATTCTGTAT CCAGTTTGCC 
    TTTTATCACT GCAACGGCTG ATGGGCCTAA GCACATTGAA ACCACTCTCA 
    CCAGGGGCAA GTTTGAAGAA TTGTGCTCTG ACTTACTCGA CAGGGTCAGG 
    ACACCTGTGG AGAATTCCCT GAGGGATGCA AAACTCAGCT TCAAAGATAT 
    TGATGAGGTG ATCCTTGTTG GTGGATCCAC ACGTATCCCT GCTGTTCAGG 
    ATCTTGTAAG GAAGCTGACA GGAAAAGAAC CCAATGTCTC AGTCAATCCT 
    GATGAAGTTG TAGCTTTAGG TGCTGCAGTT CAGGCCGGTG TTCTATCAGG 
    AGATGTGAGT GACATTGTTC TTCTTGATGT GACGCCGCTA TCGCTTGGTT 
    TGGAAACTCT TGGTGGTGTC ATGACCAAGA TCATTCCAAG AAACACCACA 
    CTTCCAACTT CTAAGTCAGA AGTCTTCTCA ACTGCTGCAG ATGGACAGAC 
    AAGCGTTGAG ATTAATGTGT TACAGGGTGA GAGAGAGTTC GTAAGAGATA 
    ACAAGTCTAT TGGTAGCTTC CGTCTTGATG GTATTCCACC TGCACCACGT 
    GGAGTTCCAC AAATCGAGGT CAAATTCGAC ATTGATGCCA ATGGAATTCT 
    ATCTGTCAGT GCTTCGGACA AAGGTACAGG AAAGAAGCAG GACATCACCA 
    TTACTGGTGC TAGTACCTTA CCAAAGGATG AGGTAGACAC AATGGTGCAA 
    GAAGCAGAGA GGTTTGCAAA GGAAG

    Gene models with high sequence identity

    1. AT5G49910.1 [+] show detail - chloroplast heat shock protein 70-2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Heat shock protein Hsp70 2.6e-43
    FPrintScan Heat shock protein Hsp70 2.6e-43
    FPrintScan Heat shock protein Hsp70 2.6e-43
    FPrintScan Heat shock protein Hsp70 2.6e-43
    FPrintScan Heat shock protein Hsp70 2.1e-32
    FPrintScan Heat shock protein Hsp70 2.1e-32
    FPrintScan Heat shock protein Hsp70 2.1e-32
    FPrintScan Heat shock protein Hsp70 2.1e-32
    FPrintScan Heat shock protein Hsp70 2.1e-32
    HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 1.7e-142
    HMMPanther Heat shock protein Hsp70 1.7e-142
    HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 2.3e-188
    HMMPanther Heat shock protein Hsp70 2.3e-188
    superfamily Heat shock protein 70kD (HSP70), peptide-bind 7.7e-57
    superfamily Actin-like ATPase domain 4.1e-30
    superfamily Actin-like ATPase domain 1.7e-58
    superfamily Actin-like ATPase domain 3.2e-31
    HMMPfam Heat shock protein 70 3.3e-110
    HMMPfam Heat shock protein 70 1.2e-131
    HMMPfam Glutamate dehydrogenase, NAD-specific 5.8e-08
    HMMPfam Glutamate dehydrogenase, NAD-specific 2.5e-17
    Coil coiled-coil 0
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    Gene3D no description 3.4e-09
    Gene3D no description 3.2e-65
    Gene3D no description 2.5e-47
    Gene3D no description 3.8e-15

    See the detailed result >

    AT5G49910.1

    Model type
    Protein coding
    Short Description
    chloroplast heat shock protein 70-2
    Curator Summary
    Stromal heat shock protein involved in protein import into chloroplast.
    Computational Description
    chloroplast heat shock protein 70-2 (CPHSC70-2EAT SHOCK PROTEIN 70-2); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, response to heat; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: chloroplast heat shock protein 70-1 (TAIR:AT4G24280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR