F21934

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F21934

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F21934

Determination of introduced cDNA(s)

  • RAFL04-09-P12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-09-P12 - Resource: pda00549

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-09-P12 - full reading 
    AAAAAAAAAA AAAAAAAAGA CACCCTCCAC AAAATATCAA TTTTCTTCCA 
    AAACAATGTC TTCATTAAAA CGCATCGTTT GGTTCCCTAT CTTGGCCATA 
    GCCATACAAA TTCTCTCTAT ACATACCGTT TTGTCTCAAA GCCAGAACAA 
    TGCGTTTCTC TTCCACAAGT GCTCAGACAT CGAAGGAAGC TTTACCTCAA 
    AAAGTCTCTA CGAGTCAAAT CTCAACAATC TCTTTAGTCA GCTCTCTTAC 
    AAAGTTCCAT CCACCGGTTT TGCCGCCTCC TCCACTGGCA ACACTCCAAA 
    CAACGTCAAC GGTTTGGCCC TTTGCCGCGG TGATGCCTCC TCCTCTGACT 
    GCCGCTCTTG TCTTGAGACT GCCATCCCCG AGCTACGTCA GAGATGTCCG 
    AACAACAAGG CGGGAATAGT ATGGTATGAC AACTGTCTTG TAAAGTATTC 
    CTCGACCAAT TTCTTCGGGA AGATAGATTT CGAGAACAGG TTCTATTTGT 
    ACAACGTCAA AAATGTGAGT GATCCATCAA CATTCAACTC GCAGACGAAA 
    GCTCTTTTAA CCGAGCTGAC AAAGAAAGCG ACTACTAGAG ATAACCAGAA 
    GCTATTTGCG ACAGGAGAGA AAAATATCGG AAAGAATAAA TTGTACGGAC 
    TAGTGCAATG TACGAGGGAC TTGAAGAGTA TTACTTGTAA GGCGTGTTTA 
    AATGGAATTA TTGGGGAGCT TCCTAACTGT TGCGACGGTA AAGAAGGAGG 
    GAGAGTTGTG GGTGGGAGCT GTAACTTTAG GTATGAGATT TACCCTTTTG 
    TTAAGACTGC TTGATTAGAG GTCCAAGTTA AAAGGGGGTC CAATGCCAAA 
    CACGGTCTTA ATTTGTGATT ATTGTCAATG TGATATGTAT TGTATGTTGT 
    TGTTTGTATA ATGTGTTGAG CCAGTAAAAT GTAATCTTCT CTTTGTGGGT 
    TATTTGTACG ATAGACACGA TTATAGAGGC TTGACTCCTA TAAATAAAAA 
    CATTCCCTTT GCCAAATGAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT3G22060.1 [+] show detail - Receptor-like protein kinase-related family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF26 2.7e-20
    HMMPfam Protein of unknown function DUF26 5.5e-20

    See the detailed result >

    AT3G22060.1

    Model type
    Protein coding
    Short Description
    Receptor-like protein kinase-related family protein
    Curator Summary
    contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain
    Computational Description
    Receptor-like protein kinase-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cell wall, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF26) (TAIR:AT3G58310.1); Has 1682 Blast hits to 1490 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1682; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR