F22022

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22022

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F22022

Determination of introduced cDNA(s)

  • RAFL09-96-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-96-L08 - Resource: pda17929

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-96-L08 - full reading 
    GAATTAGGAG AAGGAACAAA AGAAGATGGA ATCTGGAAGT ATGAAAACAC 
    CTCTGGTGAA TAATCAAGAA GAAGCAAGAA GCTCTTCTTC CATCACTTGT 
    GGTCTTCTTC TTAGTACCTC CGTCGCTGTC ACTGGCTCTT TCGTTTATGG 
    CTGCGCTATG TCATATTCAT CGCCTGCTCA GTCCAAAATC ATGGAAGAAC 
    TGGGACTTTC CGTTGCAGAT TATTCGTTTT TCACATCGGT AATGACATTG 
    GGAGGAATGA TTACGGCCGC GTTTAGTGGA AAAATTGCTG CAGTTATTGG 
    TCGTCGACAG ACAATGTGGA TCGCGGATGT TTTCTGCATC TTTGGTTGGC 
    TCGCTGTAGC CTTTGCACAT GATAAAATGC TGTTAAATAT TGGTCGAGGC 
    TTCTTGGGGT TTGGGGTTGG TCTCATTAGT TATGTGGTTC CTGTATATAT 
    AGCAGAAATT ACGCCCAAAG CATTTCGTGG AGGATTCTCT TTTTCCAATC 
    AACTTCTACA AAGTTTTGGG ATATCGCTCA TGTTCTTCAC CGGAAACTTT 
    TTTCATTGGA GAACATTAGC TCTTTTAAGT GCAATCCCAT GTGGTATCCA 
    AATGATATGT TTATTTTTTA TTCCTGAATC ACCTAGATGG CTGGCTATGT 
    ATGGTAGAGA ACGAGAGCTT GAGGTTACTT TGAAGAGGCT AAGAGGAGAA 
    AATGGTGATA TTCTCGAAGA AGCAGCTGAA ATCAGAGAAA CAGTGGAAAC 
    CTCTAGAAGA GAATCTCGAA GTGGACTAAA AGATTTGTTC AATATGAAAA 
    ACGCACATCC GTTAATCATT GGATTGGGCC TAATGCTCTT GCAACAATTT 
    TGTGGGAGTT CGGCGATAAG TGCTTATGCT GCTCGTATTT TCGACACAGC 
    CGGTTTTCCA AGCGACATAG GAACATCCAT CCTTGCAGTT ATTTTGGTAC 
    CGCAATCTAT TATTGTCATG TTTGCCGTCG ACCGATGTGG ACGCCGACCA 
    CTTTTGATGA GCTCTTCTAT CGGTCTGTGC ATATGTTCAT TTTTAATTGG 
    CCTCTCTTAC TATCTTCAGA ACCATGGTGA TTTTCAAGAG TTTTGTTCCC 
    CTATCTTAAT CGTCGGTTTA GTGGGTTATG TCTTATCCTT TGGCATTGGT 
    CTAGGTGGAC TACCATGGGT TATTATGTCT GAGGTGTTTC CGGTGAATGT 
    GAAAATTACC GCCGGTAGTC TTGTAACAGT GTCAAACTGG TTTTTTCAGT 
    TGGATTATCA TTTTCAGTTT TAATTTCATG ATGCAATGGA GTGCTTTCGG 
    AACATATTTC ATATTTGCTG GAGTTTCTCT GATGTCATTC GTATTTGTAT 
    GGACTTTGGT GCCTGAGACG AAAGGCCGAA CACTTGAAGA TATTCAACAA 
    TCACTAGGCC AACTTTCATA AATCCAAAGT TGATTCTTTA CTCCACAATG 
    CCAGACATTG TTCTTTTATG TTACATTTAT AAGTCATGTA TTATCCGATT 
    TGGAGGGGGG GGATATGGAT TTCCGAATTT TTTTACTTTG ATAAATTTTG 
    TCAATATATT TTGTTGACAG AAAAAAGAAT AATCAATATA CTGTATGTGG 
    TATTATTCTA ACAATATTTT TTAAACGTAT AATATGATTA TGTACCAATA 
    TTTATAATCA AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G08890.1 [+] show detail - Major facilitator superfamily protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major facilitator superfamily, general substrate transporter 1.1e-48
    PatternScan Sugar transporter, conserved site 0
    ProfileScan MFS 27.796
    FPrintScan Sugar/inositol transporter 1e-12
    FPrintScan Sugar/inositol transporter 1e-12
    FPrintScan Sugar/inositol transporter 1e-12
    FPrintScan Sugar/inositol transporter 1e-12
    Coil coiled-coil 0
    HMMPanther SUGAR TRANSPORTER PLANT 1.9e-19
    HMMPanther SUGAR TRANSPORTER 1.9e-19
    HMMPanther SUGAR TRANSPORTER PLANT 2.4e-169
    HMMPanther SUGAR TRANSPORTER 2.4e-169
    HMMPfam General substrate transporter 9.1e-75
    HMMPfam General substrate transporter 8.3e-10

    See the detailed result >

    AT1G08890.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08900.2); Has 22268 Blast hits to 21798 proteins in 1696 species: Archae - 379; Bacteria - 7327; Metazoa - 4739; Fungi - 6227; Plants - 2471; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR